PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9882 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 499aa MW: 55507.7 Da PI: 7.4882 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.6 | 4.4e-38 | 47 | 203 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasece 74 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a ai el+++ + Tp57577_TGAC_v2_mRNA9882 47 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLnnslftdinnnnN-------- 123 689*************************************************************6666654433321........ PP TCP 75 aesssssas....nsssg.................kaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 + s++ + + +++ +s+ s++s+ s l+l++ sr kar+rarert++++ ++n Tp57577_TGAC_v2_mRNA9882 124 ----QLSEQgvdsV---HdaemvvengennyhgqnLSLSKSGCSSTSETSKGSGLSLSRsdvrVSRVKARERARERTAKDKEKEN 201 ....2222211120...1222333444445556764445555666666777667777665556899***********99998887 PP TCP 135 kl 136 + Tp57577_TGAC_v2_mRNA9882 202 HH 203 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-42 | 48 | 199 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.028 | 49 | 107 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.966 | 179 | 199 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MEEDEIQAQH KFPRVGNEDD NNGRRGDVNR FNSWHHSSRI IRVSRASGGK DRHSKVMTSK 60 GLRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKSA SDAISELPSL NNSLFTDINN 120 NNNQLSEQGV DSVHDAEMVV ENGENNYHGQ NLSLSKSGCS STSETSKGSG LSLSRSDVRV 180 SRVKARERAR ERTAKDKEKE NHHDNVNPHH HHQHHNVHSS ISQTASFTEL LTGGINNAVP 240 TTNSPRGSVD EPSFFNKARQ QQQQQQQQQQ WSSSAPMDHY FSPMFLGSSS SRTHHHHHHH 300 QLGHSLHDHQ SMTMSSPFNS GENHSADQNQ NQHQHHLQHQ FSLLPDHMMQ NVVTSSSTQP 360 SGGDNDYNLN FTISSGLAGY NRGTLQSNSP SLLSHLQRFS VSSLDGSNNL PFFMGGGGGA 420 ASASPASASP APTAMEIIII TITITIISTR FNTISFHLYL MVAACSSIQI RKGNPKTEDF 480 HFSSIFFLQG RDFNKMEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-23 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-23 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9882 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF008533 | 7e-73 | KF008533.1 Vicia sativa subsp. sativa microsatellite VSspS-245 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341024.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341025.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341026.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341027.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341028.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341029.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341030.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341031.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341032.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341033.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341034.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341035.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341036.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341037.1 | 1e-146 | transcription factor TCP2-like | ||||
Refseq | XP_027341038.1 | 1e-146 | transcription factor TCP2-like | ||||
TrEMBL | A0A2K3MR87 | 0.0 | A0A2K3MR87_TRIPR; Transcription factor TCP2-like protein | ||||
STRING | XP_004504554.1 | 1e-138 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-46 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9882 |