PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9865
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 887aa    MW: 101041 Da    PI: 6.9809
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9865genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.2e-21106200191
                      FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                               +fY +Y+k  GF +rks s+k+  k n+ +++r+fvCsk+g r++++    +++r++r  trt+C a+l+v+ +  +++++v+ +
  Tp57577_TGAC_v2_mRNA9865 106 EFYYQYGKCKGFAIRKSDSRKRgpKGNRITVMRQFVCSKHGLRDKKHLYrIDRKREHRRLTRTNCPARLRVHYKAeKDRYVVSMF 190
                               6********************9999999999************9998875789999****************9999********* PP

                      FAR1  82 eleHnHelap 91 
                               ++ HnHel+p
  Tp57577_TGAC_v2_mRNA9865 191 VEGHNHELNP 200
                               *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-19106200IPR004330FAR1 DNA binding domain
PfamPF105512.3E-32321415IPR018289MULE transposase domain
PROSITE profilePS509669.755596632IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-6607634IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MEKYGDFVDV DSNDVHSTHG DTADVELYDD DDDDDDDEDE SYSTGGESLN YQSSDDSDDA  60
DKYDADAADD PVEVDAVQGD TLVRINSITS DEIRALEFGT IDAAYEFYYQ YGKCKGFAIR  120
KSDSRKRGPK GNRITVMRQF VCSKHGLRDK KHLYRIDRKR EHRRLTRTNC PARLRVHYKA  180
EKDRYVVSMF VEGHNHELNP SSLVHLHPVY RKTSEADRAQ IDGIQSHGIR TCHIMGYMVA  240
QKGGYAGVGL KKDLYNYFDK KIREIVKDGD VEASLNYLNV KSSTDPMLYA EYAVNISDGR  300
MKCLFWADGS SRSDYFCFGD VVAFDTTYKK KKYNYPLIIF SGFNHHSQTI IFGAALVADE  360
TTETYKWVLR CFLECMGNKH PKAVVTDGDG DMREAIKQVF PDATHRLCAW HLSKNATENV  420
KNSEYLEGFR KAIYSNFTKD QFEEFWAELI KENELEGNPW VAKTYENKSL WATAYLRDKF  480
FGRLRTKSQC EAINAIINCY VRNKWCIFEF MHNFEQAVTD YRNNEVVADF KSKYTEPVLT  540
THLRLMESDA AKIYTAEIFK EVKDEIMKVG ALIVKDKYEH GKTKTYTLTK YCKDNYEREV  600
VYDGDTLQCS CKLFDSCGLP CSHIFYVMKE EHVDHIPRSL VLSRWTKDAK IKYLNSMDCN  660
GTIESNLIEL ARFGAYCSAF THFCKEASKK NGVCREIMED IMNLQKKYCS TADPVVTQKS  720
AVGDPKTAKS KGASKKNKND TKVVRHHSKC KSTTHNARNC SVTENMQDKG NVESEPVSIG  780
DSLSQIEKNK KRKTSCHGET SAQNNCSDPP QNRGVNVTTS YVDITSRAIP PMYGIQHVMP  840
AMHPVGQSMQ LQVQPMYPIY GMPVGENSNS GFGQLQQVMK SAGRHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9865
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3P8G30.0A0A2K3P8G3_TRIPR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-87FAR1-related sequence 5