PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9859
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 315aa    MW: 36523.8 Da    PI: 6.1301
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9859genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.71.2e-1038122189
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY+eYA +  F  ++++s k  ++ge     + Cs+eg++ ++      + +t +++  +C a++ +k+e+ g w+v++++   
  Tp57577_TGAC_v2_mRNA9859  38 SFYEEYALRKRFGWKIRTSIKG-QDGELFYLVLACSREGYKVSNLPC---TLKTLPTKVKQCPARICIKMENVGLWYVKNFDPSN 118
                               5****************99998.8899**************998776...7889999999**********************999 PP

                      FAR1  86 nHel 89 
                               +H++
  Tp57577_TGAC_v2_mRNA9859 119 SHDF 122
                               9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-838122IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
DCGSSVHEFN DVDKFQDDGA SWEPGTNMSF SSVDDVKSFY EEYALRKRFG WKIRTSIKGQ  60
DGELFYLVLA CSREGYKVSN LPCTLKTLPT KVKQCPARIC IKMENVGLWY VKNFDPSNSH  120
DFSVTKAKLL QANKKINLHV KRTIEINDDA RVRIGKTFQS LVKDVGEHEN ISFCERDMGN  180
YVNKERLTRN GVQLEKNTEL NGTPPAPVDL FVYTHQHRKN KAWVDRRSEH VYVTSRRNYR  240
GSGSASTEWV QRHEIEELKI EREEMRREND ELRDMVKQLM ESLNFRPKPY TRDEVYEDIV  300
AGDNDDDMSD DGEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9859
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514173.14e-83protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2K3KRA81e-141A0A2K3KRA8_TRIPR; Uncharacterized protein
STRINGXP_004514173.11e-82(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-09FAR1-related sequence 5