PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9839
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 816aa    MW: 92822.1 Da    PI: 7.039
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9839genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.96.9e-132002682490
                      FAR1  24 rngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                                 g ++++ f Cs+eg+re+   + ++++r++++ tr+gC a+++v+ +  ++ w+vt ++ +HnH+l 
  Tp57577_TGAC_v2_mRNA9839 200 AAGVVVQQSFLCSREGYRENIGLTpEKRQREQKNDTRCGCGATFRVHIDIvTSCWYVTLFVFDHNHALL 268
                               568899*************998886778888999*************9999***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-11200268IPR004330FAR1 DNA binding domain
PfamPF105511.5E-33388482IPR018289MULE transposase domain
PROSITE profilePS509669.619666702IPR007527Zinc finger, SWIM-type
SMARTSM005750.0066677704IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
LSNRLRKDSR SLSSLPFILF VLAEDQSRYS LWLSKLLCYV LSCTKTVATK SYMCLDLLAD  60
IPHGSKSHIW SLGKSNWCGR MEFERQLENA VGVEDRVSNE LSLFELKYAD DEHRDSSFDN  120
DEYSSSVGEI GGGSDEEISG NVDGGEFEGE FEMSSTDESG EEDCDADKIN INCEADIFKI  180
DMKIISADVA ARLSRLVRNA AGVVVQQSFL CSREGYRENI GLTPEKRQRE QKNDTRCGCG  240
ATFRVHIDIV TSCWYVTLFV FDHNHALLEG TMCGLLPGHR KMTETDIQDI ESHGNVGIRP  300
YQMYGAMANS AGGFHKVGFV KKDLYNQVRR QRKEISSDAS AAVKYLRDLG KTDQLMFVSH  360
SVDKDNRLER LFWCDGESRK NFEVFGDVLA FDATYRKNKY NCPFVVFSGV NHHNQTIVFA  420
TGLVTRETEE TYVWLLEQFV CAMQGKTPVS VITDGDLAMK NAIIKVFPKA HHRLCAWHLL  480
RNATTNVGIH ESMRYLKRCM LGDIKISKFE EIWGEMVSKF GLEDNMWIKE MYAKRKMWST  540
AHIRGFFFAG LRTTSRCEAL HSHLRQFVHS KINLFKFVQQ FQRCLTYFRF REVEADFQSN  600
YGEPVIQSGL RSIEKSAANQ YTKEIFNMFK LVLSKCMLLK VLEVQEMSSC RIYKVGKYCG  660
NGEAWYVTHS EYAVDKFKCS CLRMESIGLP CDHIVCVLVF LDIAELPTCL VLPRWTKIAK  720
DLIVGSYPGG SLYWDSQVTA RYSSLVKMSK DVAELVYDDL DDYHRVVDVH NAELKRLKAK  780
HPKGKTAVGS STMDVNVLDP PQVGSVVHMS WFSPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206958.10.0protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A2Z6P9170.0A0A2Z6P917_TRISU; Uncharacterized protein
STRINGGLYMA11G29330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-91FAR1-related sequence 5