PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9782
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 422aa    MW: 47702.7 Da    PI: 6.039
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9782genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.3e-36981892102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Flkk+ye++ed+e++ ++sws++ +sf+v+d++ef+k +LpkyFkh+nf+SF+RQLn+YgF+kv++++         weF+++ F
  Tp57577_TGAC_v2_mRNA9782  98 FLKKTYEMVEDPETDPIVSWSASRDSFIVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSDR---------WEFANEGF 173
                               9********************999*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               + gkk+ll++i+rk++
  Tp57577_TGAC_v2_mRNA9782 174 QGGKKHLLKTIRRKSK 189
                               *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3894187IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-3594187IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5994187IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3298187IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-2098121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-20136148IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340137161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-20149161IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAVSHGGYDA EIGGSKSYLI PSVKPELFDD SAGSNPCQYD DVLSERKDSE LTVEEGATPS  60
HAIHIKEEVV EDDGSNNSSS IKFPKPMEGL HDAGPPPFLK KTYEMVEDPE TDPIVSWSAS  120
RDSFIVWDSH EFSKILLPKY FKHNNFSSFI RQLNTYGFRK VDSDRWEFAN EGFQGGKKHL  180
LKTIRRKSKY NKQHQGGFNL MKPPVESEVE KLKKDQNMLK LEILKLRQQQ ENSNIQLTNV  240
QERARRAELK QYQMMYFLTK MAKRPLFMEQ LIQKIKRNRE VDGNIDMVKR PKLLGTQGTS  300
VDYRSQGCQQ FATMQSELNG LFPENMNTGK MEPPPVPTRM ENRLCDSLHE LKACGGSSSR  360
QNVQDVSSAY HVMSENLLGE NSVVDEGMDV NDSNIYLELE DLITKPTDWG GSASGLVGQT  420
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-249318712120Heat shock factor protein 1
5d5u_B1e-249318721129Heat shock factor protein 1
5d5v_B1e-249318721129Heat shock factor protein 1
5d5v_D1e-249318721129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9782
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637947.10.0heat stress transcription factor A-9-like
TrEMBLA0A2Z6MTT70.0A0A2Z6MTT7_TRISU; Uncharacterized protein
STRINGXP_004507947.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-75heat shock transcription factor A2