PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9709 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | G2-like | ||||||||
Protein Properties | Length: 341aa MW: 38085.1 Da PI: 6.8617 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.9e-34 | 36 | 90 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Tp57577_TGAC_v2_mRNA9709 36 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 90 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.801 | 33 | 93 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-32 | 33 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-16 | 35 | 91 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 36 | 91 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-8 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.3E-21 | 129 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010088 | Biological Process | phloem development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MERMFPAKKP STMMNSHDRS MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVAQLGGPD 60 KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQPHKEFNE QSIKDVSAFE LQRNSGNSSS 120 MTGRNMNEMQ MEVHRRLHEQ LEVQKHLQLR IEAQGKYMQN ILEKAYNTLA GENMAAASAT 180 NFKGIGTQGI PNMKDFVSPL NNFPHFQDLN ICGSDDEQLE RPTIDGFMPN ISNENLFVEK 240 KITNNPFNGS GKGPLIWNDN NDLRLHDLGT TSSCISPQDV PNFKGDDDSL DRGDIESDPI 300 VEINYDTKLS EKKFDASMKL GITTPMINAV AAGRSSSPFS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-20 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-20 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-20 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-20 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-20 | 36 | 92 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9709 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052638 | 0.0 | BT052638.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-O-4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004514445.1 | 0.0 | myb family transcription factor APL-like isoform X2 | ||||
Swissprot | Q9SAK5 | 1e-102 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A2K3PS90 | 0.0 | A0A2K3PS90_TRIPR; MYB family transcription factor apl-like protein | ||||
STRING | XP_004514444.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 1e-104 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9709 |
Publications ? help Back to Top | |||
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