PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9668
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 1749aa    MW: 197634 Da    PI: 5.6294
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9668genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182276357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              kR   +++qle+Le+ ++ ++yps++ r+eL+ klgL++rq ++WF+ rR+k+kk
  Tp57577_TGAC_v2_mRNA9668 22 KRKMKSASQLEILEKTYAAESYPSEAIRAELSVKLGLSDRQLQMWFCHRRQKDKK 76
                              89999************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-17576IPR009057Homeodomain-like
SuperFamilySSF466895.13E-151776IPR009057Homeodomain-like
PROSITE profilePS5007116.4221777IPR001356Homeobox domain
SMARTSM003892.2E-171981IPR001356Homeobox domain
CDDcd000861.26E-132076No hitNo description
PfamPF000463.5E-162276IPR001356Homeobox domain
SMARTSM005711.9E-21537596IPR018501DDT domain
PROSITE profilePS5082716.469537596IPR018501DDT domain
PfamPF027912.3E-16538593IPR018501DDT domain
PfamPF050668.7E-13718785IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156127.5E-10930972IPR028942WHIM1 domain
PfamPF156133.3E-1211121185IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1749 aa     Download sequence    Send to blast
MEVCSEGEEK KNNSLEEENK VKRKMKSASQ LEILEKTYAA ESYPSEAIRA ELSVKLGLSD  60
RQLQMWFCHR RQKDKKAAPV MVKKEVDVAL TSAPFEEGVR HDHGLVSVLR PIGNVDSPQF  120
VAQRGMMAFP RMMALPAMDS SSYHESHRTI QELRVAAFVE RQLGEPLRED GPILGMEFDS  180
PPPGAFGASL GSVAMGQHRQ SEWPVEANIY EHLDKGISRT LHEYQFIPEQ PTVRNEIYER  240
VTASIPHSRT SLSSLPSFLN GNESAPKVYG VQGQKIPGLN LLSQSEQGRP NHVMLSASGG  300
NDDDVQKNPF ADVTLDIQSG ANQVTPIDGP LLPSDRRVIH EEELERFQRK RKNEEARMQR  360
EFEVQEKRIR KELVKQDILR QKREEQIKKE MERQERERQK EEERLLRERQ REEDRLLREQ  420
RREQERREKF LQKESLRTEK MRQKEELHRV KEEARIKAAS ERAIARRMVK DAMDLIEDEH  480
LELMELAASK KGLSSILALD YETMQNLESY GDGQTFFPPK SVQLKRAFSI QPWSDSDENV  540
GNLLMLWRFL ITFADVLGIW PFTLDELIQA FHDYDPRMLG EVHIALLRSI IKDIEDVART  600
PSTGLGANQN SVMNSGGGHP QVVEGAYVWG FDIRNWQRHL NPLTWPEILR QFALSAGFGP  660
QLKKQNIEQV HPSNNEGNDG KDIISNLRSG AAVENAVAIM QEKGLSNPRR NRHRLTAGTV  720
KYAAFHVLSL EGSRGLNILE VADKIQKSGL RDLTISKNPE ASIASALSRD SELFEKTAPS  780
TYCVRPAYRK DPADSEAIYS AARERIRIFK SGFVGAEEAN DCERDEDCES DMAKDPEIDD  840
LGAQPNTKKE VSNYEEFNAN TVVRSGKDNG EVLQTPESCH EKVDEGLRST VDEGFDEHKD  900
VCISSKITVC SNDVANPILK GVDVDEKTPG EPWVQGLMEG EYSDLSVEER LHALVALISV  960
AIEGNSIRVV LEERLEAANA LKKQMGAEAH LDKRRIKEDY FVKMQSSSYL KNKNEPAVTF  1020
PSVGGKQCPL HTVDVQNDKA LLTPCDRREQ INAQQENENP LQSSLLEVNM QRQDCSTGPD  1080
NYSIQQSIYA SERSRSNLKS YIDHLAEQTY MIRSLPLGLD RRRNRYWQFT TSASQNDPGC  1140
GRIFVELRDG CWKLIDSEEG FDALLVSLDV RGIRESHLNM MLQKIEISFK ESVRRNVQNG  1200
DTVKKLDREA VKIAKDQDCS ANIYYPTSAC MDDLDTSVAS TSFMVQLGRT EVENKDAYMR  1260
YWDFEKWMRK ECLNCSVSRA MKFGKKRCNQ ILLMCDLCHH VYFFRGSPCP SCHRTFSTSQ  1320
GNSGSYESFA HSEGKMNIDT HLSHDSSSSP MRMRLLKILL SVVEVTLPQE ALQPFWTERY  1380
RKSWSSKLEA SSSTEDILQM LTALEGAIKR EYLASDYETT SELLGSVCSS GCIPNDTIGG  1440
GRIHVLPWVP YTTAAVALRL MELDECAFYT SQQKLESKKD EKVGIVVKLP SKYAAAKNSY  1500
DAGAIVTSFQ AKHTVEDRGA LGAGLESCSK RQRTRQGRSH SRDQRSQGRV ASSRSTSRKR  1560
STTSNSRKKD SRIKGKLLGW KGTPNVRGRR SIRSRQKPAA KMDVIISEKH TPKDITEETP  1620
IFAIEEINEC ETEANARNAS NLERSDYEGD LYGATDEYHH LVDNNNNDGY KGGFSGKSEN  1680
LIAQSHYNMD DENDVNMDDD NSEEDGQVNL NTEDYIIGGD SDTGYNREEN EEHEDPDGDG  1740
STSSDCGD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9668
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515270.0AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607514.20.0homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A2Z6NC570.0A0A2Z6NC57_TRISU; Uncharacterized protein (Fragment)
STRINGXP_004505537.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator