PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9640
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 471aa    MW: 53238.5 Da    PI: 8.7013
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9640genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12185241155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA9640 185 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqARKGKQ-GGYDMEEKAARAYDMAALKYWG 241
                               78*******************87777666558877.66******************98 PP
2AP243.11e-13286335355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GV+++++ grW A+I  +     +k  +lg+f t eeA +a++ a+ k++g
  Tp57577_TGAC_v2_mRNA9640 286 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAGEAYDIAAIKFRG 335
                               9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-14185251IPR016177DNA-binding domain
CDDcd000183.70E-19185249No hitNo description
PfamPF008474.0E-9185241IPR001471AP2/ERF domain
PROSITE profilePS5103217.372186249IPR001471AP2/ERF domain
SMARTSM003802.3E-22186255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-13186250IPR001471AP2/ERF domain
PRINTSPR003671.3E-6187198IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16284344IPR016177DNA-binding domain
CDDcd000181.12E-23284345No hitNo description
SMARTSM003803.5E-30285349IPR001471AP2/ERF domain
PROSITE profilePS5103218.452285343IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17285343IPR001471AP2/ERF domain
PfamPF008473.3E-8286335IPR001471AP2/ERF domain
PRINTSPR003671.3E-6325345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MKSFENIYDT INLKNQNSNM LGFSVSPQMN ISVPSFAAAA TETVPTSFYY HPTPLHNYGF  60
YYGLEGEHVG LYSPLPINML DGSTYGIEAL SRSQSQEGSM KNQLKDSVQL PNIVEDEVSG  120
LKRWVSRDIH ATNHAQESKY GFTMSPTSQS SCVTSSQQTS LIDSVSTDTM KRKKNQNQTF  180
GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQARKGKQG GYDMEEKAAR AYDMAALKYW  240
GPSTRINFPL ENYQKELEEM KKMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA  300
RIGRVAGNKD LYLGTFTTQE EAGEAYDIAA IKFRGANAVT NFDITKYDVE KIIASNNLLN  360
SEEAKRNRKM DDLINIEEAI NPMQKRCKIQ SFSIGLEEIY NQEVEEYSNR VLHVSNPSSI  420
VTSLCSSREQ SPENRTSLPM LFGMTSTESI SSFSLPQMPL SVFAAWNDAA *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9640
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511807.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-125CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1S2YY630.0A0A1S2YY63_CICAR; AP2-like ethylene-responsive transcription factor ANT isoform X2
STRINGXP_004511806.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-118AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]