PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9591
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 1094aa    MW: 122164 Da    PI: 9.3166
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9591genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.91.1e-0570126157
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                               +r+R  ++++ ++ ++++F  +  +s++e +e+++  g+t +qV+ +F  +R + +k
  Tp57577_TGAC_v2_mRNA9591  70 KRPRDLLNPKAVNYMQSVFSIKDAISKKESREISALFGVTVTQVRDYFTSQRSRVRK 126
                               799**************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.28467127IPR001356Homeobox domain
SMARTSM003894.2E-469131IPR001356Homeobox domain
CDDcd000864.44E-470127No hitNo description
Gene3DG3DSA:1.10.10.601.7E-670138IPR009057Homeodomain-like
SuperFamilySSF466891.24E-670131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MMELWNDGLS ELEIGSSVDS IQKFLGSQRE LLHSQIDQFQ EIVVTQCKLT GVNPLSQEMA  60
AGALSIQIGK RPRDLLNPKA VNYMQSVFSI KDAISKKESR EISALFGVTV TQVRDYFTSQ  120
RSRVRKQVQL SKERALKSNS CAESLDVQIN SDPVRSMNPA PLNSVGATNV EEASYSAQEA  180
ALSDLDDSDK QFVENIFGLM QKEETFCGQE KLLEWILTIR NFSVLLWFLT GGGAMTLANW  240
LSKXXXXXXX XXXXXXXXXX XXXXXXMTLA NWLSKAAVEE QTSVLLLVLK VLCHLPLHKA  300
HPAHISALLQ SVNRLRFYRT SDISNRARVL LSKWSKLLTR NQAIKKPNGV KLSGDGRKEI  360
ILSQSIGQTI GPESWHFDVP EDILALSNEF SDDFRKPESQ SVKLLLSSSD DYNKKHPLGV  420
SSSQSRERRK VQLVEQPGSV SRSPQAARTG PVSQGRPMSA DDIQKAKMRA LFMQSKYGKT  480
ASKENKAKIN SPSKSQTKQA SIAVCSSKVP VPLKNEEDKK PLLLPSKTTN RPEAPNSKLK  540
MDLKEPLWEK CKRVKIPWKT PAEVELKDTW RVGVGENSKE VHVQENRNHR DKESIYRTVQ  600
EMPPNPKEPW DLEMDYDDSL TLEIPIEQLP DGDGPEIVDE SNQFETHAAA VQAVASSSSA  660
SNAAAAEPDL ELLAVLLKNP DLVFALTSGQ VSNVSNEETL KLLDMIKRGT VNVGLSVNAN  720
GNPGNSAKAP EKVEVSLPSP TPSRDPXXXX XXXXXXXXXX XXXXCLMSHF RVPCTLHFSH  780
VGLCLLRSGY SVEAPKNPFT QQNLAHDRRT FKSSASIATT NLSSQIPATS TTVRQHHTFV  840
PFSKQLNGTT ASPYSLPPAT NIIPEKQPLH SHSSVYVQTP FSDRGLAMKN TITADVSPVG  900
AHSTHIAMRA DGINNIKPAV PNSSMQQEGL SNSFPQSFTL SSPTTSRSAA QQIHAHMMPN  960
QPHFIEPSYH NPVHPYQPQF EKSDPMSDLQ RVRQDIPLSY HSQQNHNNYN SLVGGSMQSG  1020
SWDRNNHERE GFESWSPHDS PTRNPRYVQG RNPPESRMNN VRNHRPEWSR QRGSSGHWDR  1080
GRNENRKWHD QRR*
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9591
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8267320.0AY826732.1 Pisum sativum LUMINIDEPENDENS-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494351.10.0homeobox protein LUMINIDEPENDENS
SwissprotQ387960.0LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLA0A1S2XTK90.0A0A1S2XTK9_CICAR; homeobox protein LUMINIDEPENDENS
STRINGXP_004494350.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98092934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.20.0HB-other family protein
Publications ? help Back to Top
  1. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]