PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Nin-like | ||||||||
Protein Properties | Length: 165aa MW: 19577.8 Da PI: 6.5439 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.1 | 1.3e-26 | 44 | 94 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s +++s+yF++pi +AAkeL+++lT+LK++CR++GI RWPhRk++sl Tp57577_TGAC_v2_mRNA9575 44 TKSLSRDTISQYFYMPISQAAKELNIGLTLLKKRCRELGIGRWPHRKLTSL 94 799*********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.894 | 28 | 115 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.6E-22 | 47 | 94 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MFDILFDSEK EHLCCTDIEI KKEVVEFKPE VEERKKITIS GEDTKSLSRD TISQYFYMPI 60 SQAAKELNIG LTLLKKRCRE LGIGRWPHRK LTSLQTLINN VQELREEEEP LSDEKLMNVI 120 EMLEKEKKLV EEMPDMELDY RTKRLRQACF KANYKKRKLM EQVF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9575 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028753648.1 | 7e-59 | protein RKD2 | ||||
Swissprot | Q9M9U9 | 2e-48 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2K3L3Q8 | 1e-112 | A0A2K3L3Q8_TRIPR; Protein RKD1 | ||||
STRING | GLYMA05G01030.2 | 5e-58 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 8e-40 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9575 |