PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 79aa MW: 8405.47 Da PI: 9.4018 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.5 | 6.5e-28 | 22 | 75 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY eC+kNhAa Gg+avDGC Efm+ + ++ l+CaACgCHRnFH+r+v++ Tp57577_TGAC_v2_mRNA9566 22 IRYGECQKNHAAYSGGYAVDGCTEFMAIS--STGEGVLTCAACGCHRNFHKRTVQS 75 79*************************93..345899***************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.3E-25 | 22 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.4E-23 | 23 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-14 | 24 | 75 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.06 | 24 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MKKRQVVVVV KSNNSSSSRN IIRYGECQKN HAAYSGGYAV DGCTEFMAIS STGEGVLTCA 60 ACGCHRNFHK RTVQSTSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9566 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003522326.1 | 8e-29 | mini zinc finger protein 3 | ||||
Refseq | XP_014632621.1 | 8e-29 | mini zinc finger protein 3 | ||||
Refseq | XP_028229098.1 | 8e-29 | mini zinc finger protein 3-like | ||||
Refseq | XP_028237252.1 | 8e-29 | mini zinc finger protein 3-like | ||||
Swissprot | Q2Q493 | 4e-24 | MIF3_ARATH; Mini zinc finger protein 3 | ||||
TrEMBL | A0A2K3MVT6 | 9e-50 | A0A2K3MVT6_TRIPR; ZF-HD homeobox-like protein | ||||
STRING | GLYMA04G33640.1 | 3e-28 | (Glycine max) | ||||
STRING | GLYMA06G20810.1 | 3e-28 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1550 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18835.1 | 2e-22 | mini zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9566 |