PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ARR-B | ||||||||
Protein Properties | Length: 237aa MW: 26919.6 Da PI: 6.617 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 22.9 | 1.9e-07 | 145 | 166 | 1 | 22 |
G2-like 1 kprlrWtpeLHerFveaveqLG 22 k rl Wtp+L ++F+ av+qLG Tp57577_TGAC_v2_mRNA9555 145 KSRLSWTPDLDKQFLTAVNQLG 166 68*******************7 PP | |||||||
2 | Response_reg | 35 | 7.4e-13 | 9 | 99 | 12 | 106 |
HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESE CS Response_reg 12 ellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakd 96 +r +++ y +v ++ + ++a ++l ++++D+il+ +mp d ++++ +i+++ p+i+++ +++ + + + Ga Tp57577_TGAC_v2_mRNA9555 9 CTIRDICNGLCY-QVITCCTISDARNYLFNQNFDIILIEANMPSNDTFDFVGQITSHF---PVIMMSHDPTPSSVMDSITQGACA 89 56899999999*.9999***************************************88...************************ PP EEESS--HHH CS Response_reg 97 flsKpfdpee 106 f sKp ++++ Tp57577_TGAC_v2_mRNA9555 90 FWSKPLEENQ 99 *****99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.28E-17 | 1 | 114 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 21.197 | 1 | 108 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.93E-9 | 1 | 112 | No hit | No description |
Pfam | PF00072 | 1.7E-8 | 6 | 100 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 9.5E-17 | 10 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-7 | 144 | 170 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
VDHDIGALCT IRDICNGLCY QVITCCTISD ARNYLFNQNF DIILIEANMP SNDTFDFVGQ 60 ITSHFPVIMM SHDPTPSSVM DSITQGACAF WSKPLEENQF KIMWQHLVRK ALSETPELPQ 120 TLEVKGGKKR GREDVDLPKQ PLPKKSRLSW TPDLDKQFLT AVNQLGKYRK YLKGEIKKSK 180 FSRLSAFQGH DEIPTQEQHS AFQGYDEIPT QEQHSAFQES EMAIASGTFR NKNALLC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9555 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013455021.1 | 3e-52 | two-component response regulator ARR14 | ||||
TrEMBL | A0A392MN78 | 7e-78 | A0A392MN78_9FABA; Two-component response regulator ARR2-like (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 6e-20 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9555 |