PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 35281.1 Da PI: 6.1786 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.9 | 1.3e-36 | 71 | 159 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceae 76 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++akpai++l ++ + Tp57577_TGAC_v2_mRNA9534 71 RGRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQLDQLppwkpslltkQ---------- 145 689*************************************************************43333333221.......... PP TCP 77 sssssas.....nss 86 ++++++ n++ Tp57577_TGAC_v2_mRNA9534 146 -QQQNDDvseklNDN 159 .11111111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-32 | 72 | 178 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.792 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
LDPLSNNHHY YYHHQNDVVL NTKHDVELTP LLQQQGNKKR CRSTTTSVDY VGKMNGGEIV 60 EVDGGHIIRS RGRKDRHSKV CTAKGPRDRR VRLSAHTAIE FYDVQDRLGF DRPSKALDWL 120 INKAKPAIDQ LDQLPPWKPS LLTKQQQQND DVSEKLNDNG NGNENGNENE FRFLQNFNSN 180 SNGFVSFESE IGETTPSSPI QFPDLLSRTD SNDLRLSLQQ NQHLPRLLWV PDLLLVAFLV 240 SVCRHELEVM MMMRCMAVYL TGLRLLPQIL AVELANNFLI LQEPDLETLI LEIMLVCDCF 300 MLVSKIFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-19 | 78 | 131 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-19 | 78 | 131 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9534 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489051.1 | 1e-69 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-48 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2K3NTR4 | 1e-107 | A0A2K3NTR4_TRIPR; Transcription factor TCP4-like protein | ||||
STRING | XP_004489051.1 | 4e-69 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24162 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-48 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9534 |