PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9478
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 713aa    MW: 78766.2 Da    PI: 7.3425
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9478genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.62.6e-23527585259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++W KYGqK+++gs++prsYY+C s  +Cp++k v++s++ +++ ++tY+++Hnh 
  Tp57577_TGAC_v2_mRNA9478 527 EDSWTWIKYGQKPINGSPHPRSYYKCNSFsDCPARKMVQKSKTKGNTYVVTYKSDHNHI 585
                               79************************7665****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.786521587IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-25521587IPR003657WRKY domain
SuperFamilySSF1182903.14E-21521585IPR003657WRKY domain
SMARTSM007745.4E-26526586IPR003657WRKY domain
PfamPF031063.6E-21527584IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MFFVSPMDNN DWDLFAIVRS CKASASTPHD TISENPSPPP TPTTTNTTTN NTTSHQRATP  60
SYFDNRTSAH RNSSISFASP TIPIPTSTIP TIITNTKSSP TXXXXXXXIT TTTPTTFTTA  120
ALTSTICTLT NTIATPATTT IPTIITNTNP DTFIPIPTTS INTFNITSPT NNSTAITPFY  180
TTTTFTTSNL TTTPATTIIP TIITNATSSP TAIIPAFSTA TIPKKITSTT NTITNTNTSF  240
HNLNRSSTFF NIPTFIEQQL MQPNELTELE KLTTTRSIPT TTIIPTIFNN TTSSPTTIVS  300
TLSMTSIPTY ITTIGNTNNS VHNSKESSSF SYFPTLIKQQ NELTELEKLK HNFNPNTTIS  360
IPTNTFSTFN ITNPNTTNTM IAPIYTTNTF TTPTLTSTIC THTTTTTHPT MNNTNISVQG  420
TNQYPTISNF TIPIKQQIQP NNNNQVFFPK HLTHIEMTNL HFDRTYNQPS VPQQLPRESN  480
QLPLVPQINS QVLSSTHPQE PQHNSRKRKN NNQMGLEGHV IEEKVKEDSW TWIKYGQKPI  540
NGSPHPRSYY KCNSFSDCPA RKMVQKSKTK GNTYVVTYKS DHNHIKPAGN LNSMIGTSLN  600
KSSETRLPAT REPGSSPNVG NFHLPNVAVL QFDQPESSNV SNFRSPNVMM LQFDQLESNN  660
GQIFADESDK KITGSLDDDD DDDDAILLEK MKTILENFLV DFKHIMALIP LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-125285871879Disease resistance protein RRS1
5w3x_D1e-125285871879Disease resistance protein RRS1
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2058325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.17e-24WRKY DNA-binding protein 27