PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9471

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 192aa MW: 22550.1 Da PI: 9.4188

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9471	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.1	1.4e-18	7	97	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 fYn YA+ F rk+ +sk nge t+ tfvC+++g ++e+k +++r +r+ tr gC ak v+ +k +g+w + +++ Hn Tp57577_TGAC_v2_mRNA9471 7 FYNWYASFHDFAARKHVVLRSKVNGELTQLTFVCYRQGIAKETKFPsISRRRVPRNRTRYGCPAKCYVHIHKiTGRWFFKLFNNTHN 93 9**************************************9998845666679********9999999************ PP FAR1 87 Hela 90 H+l Tp57577_TGAC_v2_mRNA9471 94 HALL 97 *995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-17	7	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MLSCFIFYNW YASFHDFAAR KHVVLRSKVN GELTQLTFVC YRQGIAKETK FPSISRRRVP 60 RNRTRYGCPA KCYVHIHKIT GRWFFKLFNN THNHALLDDQ FMDAKAACEY LESMRTSDDN 120 MFWRHKIDDN GRLTHLFWCD GAAQRDYNVF GDVVAFDATY KRNKYMCPLV IFSVLIVAVW 180 CVTVMVIHSS F*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9471

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A392MH04	4e-40	A0A392MH04_9FABA; Protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.2	1e-15	FAR1-related sequence 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9471