PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9452
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 331aa    MW: 36897.9 Da    PI: 9.0243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9452genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-163180255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +gr+vAeI+d ++   + r +lg+f taeeAaka+++a+  l+g
  Tp57577_TGAC_v2_mRNA9452 31 KFVGVRQRS-SGRYVAEIKDTTQ---NIRMWLGTFETAEEAAKAYDEAATLLRG 80
                              799***999.7*********433...5**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-253188IPR001471AP2/ERF domain
CDDcd000181.96E-273187No hitNo description
PROSITE profilePS5103218.073188IPR001471AP2/ERF domain
SMARTSM003801.4E-323195IPR001471AP2/ERF domain
PfamPF008471.1E-103180IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-173189IPR016177DNA-binding domain
PRINTSPR003672.8E-63243IPR001471AP2/ERF domain
PRINTSPR003672.8E-65470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEIQFEEPKS LRPKRGNKFK GKNKKIETKN KFVGVRQRSS GRYVAEIKDT TQNIRMWLGT  60
FETAEEAAKA YDEAATLLRG SNTRTNFVTN VSYDSPLASR IQSLLNNRGK GTKQQEEDMD  120
VRRSITNRAN TASDTTNRTR AGSTTNNTST TRGYVKSTSA RTRSVASTNT DISGITNSTS  180
ASSVTSTNTI ISTNSSDNNI HKNIENTISS VTTIQNKKLF EDAYRPDLSI LNEYESSFNK  240
SNVSWDFGPI FDNFPFGQGL DMKNHDGILC DMVDLGVSEF ERMKVERQIS ASLYAINGVQ  300
EYMETVQDSN EALWNLSPLC SFLCSNKQHV *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Involved in early stages of root nodule development. Functions redundantly with ERN1. Is essential with ERN1 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9452
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1568271e-120AC156827.4 Medicago truncatula chromosome 6 clone mth2-15c17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489691.11e-146ethylene-responsive transcription factor ERN2-like
SwissprotA9Y0K81e-143ERN2_MEDTR; Ethylene-responsive transcription factor ERN2
TrEMBLA0A2K3PRH40.0A0A2K3PRH4_TRIPR; Ethylene-responsive transcription factor rap2-11-like protein
STRINGXP_004489691.11e-145(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1869946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-20related to AP2 11
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Cerri MR, et al.
    The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection.
    Plant Physiol., 2016. 171(2): p. 1037-54
    [PMID:27208242]