PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9423
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 660aa    MW: 73954.8 Da    PI: 4.9237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9423genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14472518455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Tp57577_TGAC_v2_mRNA9423 472 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYLKQLR 518
                               7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-5416193IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.676468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19470534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-12472517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-19472534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-16472522No hitNo description
SMARTSM003531.5E-17474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MNNMASHEPP IGSSKLQNML QAAVQSVQWT YSLFWQLCPQ QMILVWGDGY YNGAIKTRKT  60
VQPMEVNAEE ASLQRSQQLR ELYESLSAGE TNPPTRRPCA SLSPEDLTES EWFYLMCVSF  120
SFPPGVGLPG KAYTRRQHVW LTGANEVDSK TFSRAILAKT VVCIPVLDGV VEFGTVEKIH  180
EDLNFIKHVK SFFVDNHSMP PKPALSEHST SNPTSSTDHI PIIMYTVADP PMTNPNQDDM  240
DEDEEEEEED DEEEGEVESG SDNEIGGRNR RATSMTPIVE PSELMQIEMP DDIRVGSPND  300
GSNNLDSDFH LLAVSNQGNP SGQVDSYKTM STRRWGPIED SVQVQPPSSV LHHPLEDLTQ  360
EDTHYSQTVS TILQNQSTRW INSPSINYIT YSTQSSFTNW ANHNFHALPP XXXXXXXXXX  420
XXXYILFTVP FLHTKNHDET SPQTNDTSGG LNNDPSARLR GKGGPQDELS ANHVLAERRR  480
REKLNERFII LRSLVPFVTK MDKASILGDT IEYLKQLRRK IQDLETRNRQ IESERSGGTV  540
LVGPTEKKKV RIVEGCSGAN RAKAVEVVEK EVVASVQVSI IESDALLEIE CLHREGLLLD  600
VMQMLRELRI EVIGVQSSLN NGVFVAELRA KVKENEANGK KVSIVEVKRA LNQLIPHNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2281931192Transcription factor MYC3
4rqw_B1e-2281931192Transcription factor MYC3
4rs9_A1e-2281931192Transcription factor MYC3
4yz6_A1e-2281931192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1476481ERRRRE
2477482RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9423
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995650.0KM199565.1 Trifolium repens isolate Tr_AN1 bHLH protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642244.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A097J9V60.0A0A097J9V6_TRIRP; BHLH protein
STRINGAES609070.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-100bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]