PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9370
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 292aa    MW: 33404.6 Da    PI: 10.1794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-14221266148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT+ E   lv++   +G + W+ Ia+ m+ gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA9370 221 KGQWTANENRNLVELMDSFGRN-WTEIAKFMN-GRNAKQCRERWYNHL 266
                               799*****************66.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.871216270IPR017930Myb domain
SuperFamilySSF466894.38E-17217279IPR009057Homeodomain-like
SMARTSM007174.6E-13220268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-19222279IPR009057Homeodomain-like
PfamPF139213.3E-14224279No hitNo description
CDDcd001672.20E-11224266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKLDLSFEEK ISYLFGDYPK YSSMKVDIST IISSQLNSPF SYSPSHCTTF LYQNYCNPFK  60
NHHLKGSNHH SNFSTVFPSS IGPITMIPTP SYKATHNNGS QRKSIGAQNP MMFESNNNKM  120
KTMHGRLNTS KGVWDLSKKN IFQYGETSQP RVSQSLPPSL VYDADPSLSI KRKHQGDLSS  180
NGGIEYKPQK NDPGLVLSDQ KRQKMSQKNS EIRHKDSNTI KGQWTANENR NLVELMDSFG  240
RNWTEIAKFM NGRNAKQCRE RWYNHLRPQI KFNRNNESES FDVVMTSIVK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-13218279466B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456909.12e-86transcription factor MYB98
TrEMBLA0A396H3981e-106A0A396H398_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES786301e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.15e-18myb domain protein 115