PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 188aa MW: 21893.8 Da PI: 4.9679 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.6 | 1.1e-14 | 118 | 181 | 2 | 67 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 fY++YA++ GF +rk + k+ ng i +r+f C++eg+ + + + +ke+r+r+ +r++Cka+l+ Tp57577_TGAC_v2_mRNA9232 118 FYKRYAYQHGFAIRKGRFVKQ--NGIISRRDFFCYREGSVSLKIIDPSKEQRKRELSRCECKAHLR 181 9***************98877..**********************99****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-12 | 118 | 180 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
VLKYTFYLLF LFVDDKQHNV MDSVNVIDMN FDLNECPIED ISHENGNSAI IVEHFDHAIV 60 ANDVLEVDDI GSFEKENLAP YSENIQVNQF LEEVDKDGQN IIPFVGQIFL TEEEAFAFYK 120 RYAYQHGFAI RKGRFVKQNG IISRRDFFCY REGSVSLKII DPSKEQRKRE LSRCECKAHL 180 RKFYLSC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9232 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014622071.1 | 4e-71 | protein FAR1-RELATED SEQUENCE 11-like isoform X4 | ||||
TrEMBL | A0A445H0B1 | 2e-69 | A0A445H0B1_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment) | ||||
TrEMBL | A0A445JH67 | 3e-69 | A0A445JH67_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment) | ||||
STRING | AES62383 | 1e-51 | (Medicago truncatula) | ||||
STRING | AES74601 | 4e-52 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15165 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-20 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9232 |