PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA922
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 253aa    MW: 29462.1 Da    PI: 7.0659
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA922genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.72.9e-2675165190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtklele 84 
                              +fYn+Y++++GF+vr++++++s+ n+e++ ++fvCskeg+r+++  +++++    + + tr gC+a++++++++ gkw+v+k+++e
  Tp57577_TGAC_v2_mRNA922  75 EFYNAYGRRIGFTVRVHHNRRSRINKEVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPPTREGCQAMVRMTLTDGGKWVVAKFVKE 159
                              6******************************************99883333.2448899*************************** PP

                     FAR1  85 HnHela 90 
                              H+H+l+
  Tp57577_TGAC_v2_mRNA922 160 HTHKLM 165
                              ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2375165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMDHQSGQGF DSYGSDPNVI AETSEKHDKV DVDISNNLEL CAGEDERFVE QPVADSDTIE  60
PFIGMEFNSR EEAREFYNAY GRRIGFTVRV HHNRRSRINK EVIGQDFVCS KEGFRAKKYV  120
HRKDRVLPPP PPTREGCQAM VRMTLTDGGK WVVAKFVKEH THKLMSPSEV PWRRSEKHLI  180
SEDEKDRRIR ALSLELYNER QKYKRRCAAY EEQINMILND VERHTEHISK KVADVVRNIR  240
EIEEEKSESN GR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465741e-171AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597516.11e-158protein FAR1-RELATED SEQUENCE 5
RefseqXP_024632575.11e-158protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K3MVY20.0A0A2K3MVY2_TRIPR; FAR1-related protein
STRINGAES677671e-157(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.18e-42FAR1 family protein