PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 29462.1 Da PI: 7.0659 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.7 | 2.9e-26 | 75 | 165 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtklele 84 +fYn+Y++++GF+vr++++++s+ n+e++ ++fvCskeg+r+++ +++++ + + tr gC+a++++++++ gkw+v+k+++e Tp57577_TGAC_v2_mRNA922 75 EFYNAYGRRIGFTVRVHHNRRSRINKEVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPPTREGCQAMVRMTLTDGGKWVVAKFVKE 159 6******************************************99883333.2448899*************************** PP FAR1 85 HnHela 90 H+H+l+ Tp57577_TGAC_v2_mRNA922 160 HTHKLM 165 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-23 | 75 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMDHQSGQGF DSYGSDPNVI AETSEKHDKV DVDISNNLEL CAGEDERFVE QPVADSDTIE 60 PFIGMEFNSR EEAREFYNAY GRRIGFTVRV HHNRRSRINK EVIGQDFVCS KEGFRAKKYV 120 HRKDRVLPPP PPTREGCQAM VRMTLTDGGK WVVAKFVKEH THKLMSPSEV PWRRSEKHLI 180 SEDEKDRRIR ALSLELYNER QKYKRRCAAY EEQINMILND VERHTEHISK KVADVVRNIR 240 EIEEEKSESN GR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA922 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146574 | 1e-171 | AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597516.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_024632575.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K3MVY2 | 0.0 | A0A2K3MVY2_TRIPR; FAR1-related protein | ||||
STRING | AES67767 | 1e-157 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 8e-42 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA922 |