PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9206
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 337aa    MW: 35808.1 Da    PI: 8.299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9206genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-11273318655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Tp57577_TGAC_v2_mRNA9206 273 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 318
                               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-14270330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-10271322No hitNo description
Gene3DG3DSA:4.10.280.103.6E-13272329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-8273318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYRPPSSSGS SSSSSSQQQQ SSISQQTGLT RYDSAPGSLL ASTVDAIIGG GSRLLPGTGG  60
GGGGGHHYFS GDSNQQHQQQ QQQHQLQRSS NGYVDGFDGS AALLRQKSSP AGFLNHLATL  120
NHNNSAGFTI TRGGNGGSRL KSELSFTGGG GSGGGQECLS RISENVVDYA TASGNGSLHN  180
TSTWGGPDNN NNNNSNSIVF SSSAPQTNNT NKRSSRTDND DPDLLLHCLT ALETQYSLPQ  240
TSLEMDKLMH NIPQDSVPCK IRAKRGCATH PRSIAERERR TRISGKLKKL QDLVPNMDKQ  300
TSYSDMLDLA VQHIKGLQTQ VQKLHEDLEN CTCGCK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592849.11e-140transcription factor bHLH128 isoform X1
SwissprotQ8H1028e-66BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2K3N4G00.0A0A2K3N4G0_TRIPR; Transcription factor bHLH128-like protein
STRINGAES631001e-140(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]