PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9183

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 776aa MW: 86963.4 Da PI: 4.5654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9183	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00035	571	607	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R++i +++ eLr ++P+ +K s + L ++++Y+ L Tp57577_TGAC_v2_mRNA9183 571 RQQIQDCIKELRGIIPHG-----GKCSIDSLLDRTIRYMLFL 607 89***************8.....7888888999999999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.3E-12	61	139	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.575	558	607	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-5	571	613	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MEMAMTVPFS LRNKLKTLCA YGDGWSYAIF WRFLEKNPPM LLNVEEAYYE EQLGEGIQNM 60 IPQVHLLGEG IVGEAAFTKK HNWLHSVSCE VDSGLYQQFS SGIIKTIVVI PVKACGVVQF 120 GSRNTILETN DFLDQTRSLL KEIDDIGMIG DSENDVFPLD FTNDDLDGLL ASISSENSCD 180 WNLKYLHNEN RNDLREVFSS CEERITSPEF DSSSLSDQLK CTIKAFLEPN SSMDNLISQN 240 TPLFDENLCF DSLEQLFASE TIAQEVCTSF ASSIVHDSSL TSLQNSMDNV VTEVDLPASS 300 ITLNGISSSL EPIDMSAEIL KFSSMDDLCQ CFAPSQEATS SCRTMIQLNN NVSERIKFIP 360 TCSDLGLPEK ETSVVIHSSE NDFLDNMEFN LGCDQGSEWW VNLLTPLVSA AADNTGFSEC 420 ISELNTSTPT DNTRKRLFSE LGIEELLRDE TNYINPFNSS SFENELSSSN KKHMVEFSPM 480 NITSSHFGNL AGAETRANLI HSGSELDKSN SVLTMKDTFP KLQVGVLVND QNSINIESAV 540 PVHPRRSEEP TKPTKKKAKP GESTRPRPKD RQQIQDCIKE LRGIIPHGGK CSIDSLLDRT 600 IRYMLFLRGI IKYADILQEP NEPKLIDQEN EVIPKDKNHG ATWAFEVANQ TMVCPIIVED 660 MNPPGQMLIE VRLRERTHVM LCEDQGFFLE IVDIIRGFGL NILKAKMDLR KNKLWARFIV 720 EVTKSNVGLH IILYTNRHVT RIDVFWSLIN LLQQPTAARI DSSNKHGNII PSNIA*

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MEMAMTVPFS LRNKLKTLCA YGDGWSYAIF WRFLEKNPPM LLNVEEAYYE EQLGEGIQNM  60
IPQVHLLGEG IVGEAAFTKK HNWLHSVSCE VDSGLYQQFS SGIIKTIVVI PVKACGVVQF  120
GSRNTILETN DFLDQTRSLL KEIDDIGMIG DSENDVFPLD FTNDDLDGLL ASISSENSCD  180
WNLKYLHNEN RNDLREVFSS CEERITSPEF DSSSLSDQLK CTIKAFLEPN SSMDNLISQN  240
TPLFDENLCF DSLEQLFASE TIAQEVCTSF ASSIVHDSSL TSLQNSMDNV VTEVDLPASS  300
ITLNGISSSL EPIDMSAEIL KFSSMDDLCQ CFAPSQEATS SCRTMIQLNN NVSERIKFIP  360
TCSDLGLPEK ETSVVIHSSE NDFLDNMEFN LGCDQGSEWW VNLLTPLVSA AADNTGFSEC  420
ISELNTSTPT DNTRKRLFSE LGIEELLRDE TNYINPFNSS SFENELSSSN KKHMVEFSPM  480
NITSSHFGNL AGAETRANLI HSGSELDKSN SVLTMKDTFP KLQVGVLVND QNSINIESAV  540
PVHPRRSEEP TKPTKKKAKP GESTRPRPKD RQQIQDCIKE LRGIIPHGGK CSIDSLLDRT  600
IRYMLFLRGI IKYADILQEP NEPKLIDQEN EVIPKDKNHG ATWAFEVANQ TMVCPIIVED  660
MNPPGQMLIE VRLRERTHVM LCEDQGFFLE IVDIIRGFGL NILKAKMDLR KNKLWARFIV  720
EVTKSNVGLH IILYTNRHVT RIDVFWSLIN LLQQPTAARI DSSNKHGNII PSNIA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9183

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013468851.1	0.0	transcription factor EMB1444
TrEMBL	A0A2K3N4A7	0.0	A0A2K3N4A7_TRIPR; Transcription factor bHLH157-like protein
STRING	GLYMA20G35921.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6955	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	3e-38	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9183