PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9049

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 427aa MW: 47350.5 Da PI: 7.261

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9049	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	2e-07	340	380	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P + K++ a++L +A +Y+k L Tp57577_TGAC_v2_mRNA9049 340 ARHRRERISDRIRVLQKIVPGgN------KMDTASMLDEAANYLKFL 380 599***************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.049	331	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.78E-9	337	385	No hit	No description
SuperFamily	SSF47459	1.83E-13	337	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	337	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-5	341	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MWNTQNFEGG YNISNSLTHQ IQEMHKVQIG NTYSNSERVM PNTNLSQHET TMAVKSKAGS 60 SWREEPLIPQ SYKSISPYNI MPDFNMAHQQ QQLNNSFDCL LSASNSNTAD TSVENDDDGI 120 SKLFSDCKNL WNFSYVSTAT SSGEAGSNVS NGTSYEAPTH VQTPDKASIR SVGSNALTQI 180 GTPNTSLIRS VSATDCTRNK DTQCPLSIEL DETMSQSSSD QFMNQRKAIQ SSTIHNSSSI 240 EDGFRLITDK PPKSKKPRCD KGPCSTNINF QQPNSSSSMC YSSSNDQEPD PEAIAQMKEM 300 MYRAAAFRPV NFGMDDIDVI EKKPKRKNVK ISNDPQTVAA RHRRERISDR IRVLQKIVPG 360 GNKMDTASML DEAANYLKFL RSQVKALESL GNKVNSMDCN PSSIAFSFNP SFHMQIPNYN 420 NHHSQG*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MWNTQNFEGG YNISNSLTHQ IQEMHKVQIG NTYSNSERVM PNTNLSQHET TMAVKSKAGS  60
SWREEPLIPQ SYKSISPYNI MPDFNMAHQQ QQLNNSFDCL LSASNSNTAD TSVENDDDGI  120
SKLFSDCKNL WNFSYVSTAT SSGEAGSNVS NGTSYEAPTH VQTPDKASIR SVGSNALTQI  180
GTPNTSLIRS VSATDCTRNK DTQCPLSIEL DETMSQSSSD QFMNQRKAIQ SSTIHNSSSI  240
EDGFRLITDK PPKSKKPRCD KGPCSTNINF QQPNSSSSMC YSSSNDQEPD PEAIAQMKEM  300
MYRAAAFRPV NFGMDDIDVI EKKPKRKNVK ISNDPQTVAA RHRRERISDR IRVLQKIVPG  360
GNKMDTASML DEAANYLKFL RSQVKALESL GNKVNSMDCN PSSIAFSFNP SFHMQIPNYN  420
NHHSQG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9049

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013444240.1	0.0	transcription factor bHLH87
Refseq	XP_024627691.1	0.0	transcription factor bHLH87
TrEMBL	A0A2Z6NZ77	0.0	A0A2Z6NZ77_TRISU; Uncharacterized protein
STRING	XP_004510332.1	1e-151	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9049