PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8964
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 431aa    MW: 49358.1 Da    PI: 7.0208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8964genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.5e-51141561128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyat 70 
                               + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLp+                ++++ekewyf+++rd+ky++
  Tp57577_TGAC_v2_mRNA8964  14 MLPGFRFHPTDEELVGFYLKRKIQQRPLAI-ELIKQLDIYKFDPWDLPNpvqvcflyilymfveLASTGEKEWYFYCPRDRKYRN 97 
                               579************************999.89**************976899999999998865556899************** PP

                       NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               ++r+nr+tk+g+Wkatg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Tp57577_TGAC_v2_mRNA8964  98 STRPNRVTKAGFWKATGTDRPIYSSeGSRCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 156
                               ***********************9966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5114166IPR003441NAC domain
PROSITE profilePS5100553.24714210IPR003441NAC domain
PfamPF023651.4E-2516156IPR003441NAC domain
SuperFamilySSF1019411.31E-51198210IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEERNGCEKL DEIMLPGFRF HPTDEELVGF YLKRKIQQRP LAIELIKQLD IYKFDPWDLP  60
NPVQVCFLYI LYMFVELAST GEKEWYFYCP RDRKYRNSTR PNRVTKAGFW KATGTDRPIY  120
SSEGSRCIGL KKSLVFYKGR AAKGVKTDWM MHEFRLPSLI DSSSSPKKYV DKTIPANVSK  180
ICQIYIYLEH FCWYQLIDLE SWAICRIFKK TNATAQRALS HSWVPPLLET STSNVLTNDG  240
NQNQFYSSNM ILTKKPMINQ FCSTTNNTTQ QLTTSSSTTL CPLDVTSYND KPIIDPLIYK  300
PLYRLPFSND QDLNLSTGSL FSSPLETSCN KTSMDVSSLL LGMSSEGTTS NYTNGLQDHY  360
NNEYPFMANI IPNVNVPHVD EQELETVRSI GFPFTMPFNI GDAWKSSFVW DTSSCTSDEP  420
SSYSTTKCYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-471621719171NO APICAL MERISTEM PROTEIN
1ut4_B6e-471621719171NO APICAL MERISTEM PROTEIN
1ut7_A6e-471621719171NO APICAL MERISTEM PROTEIN
1ut7_B6e-471621719171NO APICAL MERISTEM PROTEIN
3swm_A6e-471621722174NAC domain-containing protein 19
3swm_B6e-471621722174NAC domain-containing protein 19
3swm_C6e-471621722174NAC domain-containing protein 19
3swm_D6e-471621722174NAC domain-containing protein 19
3swp_A6e-471621722174NAC domain-containing protein 19
3swp_B6e-471621722174NAC domain-containing protein 19
3swp_C6e-471621722174NAC domain-containing protein 19
3swp_D6e-471621722174NAC domain-containing protein 19
4dul_A6e-471621719171NAC domain-containing protein 19
4dul_B6e-471621719171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8964
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445709.10.0protein FEZ
SwissprotQ9ZVH05e-99FEZ_ARATH; Protein FEZ
TrEMBLA0A072U1R30.0A0A072U1R3_MEDTR; NAC domain class transcription factor
STRINGXP_004516088.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-97NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]