PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8959
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ZF-HD
Protein Properties Length: 395aa    MW: 43217.5 Da    PI: 9.2307
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8959genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.41.5e-3266125359
               ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee...gtaaalkCaACgCHRnFHRrevee 59 
                               ++ YkeClkNhAaslGgha+DGCgEfmps++++   +++++lkCaACgCHRnFHRre++e
  Tp57577_TGAC_v2_mRNA8959  66 SYSYKECLKNHAASLGGHALDGCGEFMPSSSSSinpNDPRSLKCAACGCHRNFHRREPQE 125
                               578*************************987764355699*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-2867123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.87469122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2069125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.5E-3169122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.96E-16267338IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-27270341IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-25280337IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTSRNIDADS QTPQSKQQTN INNNITPTTT TTLKSSSPFT NGTNKRHYTT ITTPPPPPPP  60
PLSSMSYSYK ECLKNHAASL GGHALDGCGE FMPSSSSSIN PNDPRSLKCA ACGCHRNFHR  120
REPQEHIITT TAATTTATPT NNNNYLSCIY TTPSTTVPPP QPPPPLQLPH RGPISQSTSP  180
SQSTSPSQSP SPISSPSSPP PLSHVPPSYH SSAPHMLLAL GNPYSTVTPP HSDHDQHHHH  240
HHHQRNLNFA SSVVKLENNN NINNNNNNNN NSIINTSSGK KRYRTKFSKE QKDKMHEFSE  300
KLGWRMQKGE DGLVQKFCND IGVSRGVFKV WMHNNKNNSL RKRSESDVGV GIATQGDDDN  360
KNNHDNDRSN NVIHMNQDAC VNVRVVSSVD GLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-202813381875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509968.11e-121zinc-finger homeodomain protein 11-like
TrEMBLA0A2K3L8D01e-171A0A2K3L8D0_TRIPR; Transcription factor HB29-like protein
STRINGXP_004509968.11e-121(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-25zinc finger homeodomain 1