PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8752

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HB-other

Protein Properties

Length: 534aa MW: 60189.2 Da PI: 7.2234

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8752	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.4e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ ql +Le++++ ++yp++e++ eLA++l Lte+q++ WF+ rR k+k+ Tp57577_TGAC_v2_mRNA8752 20 NKRKLKTPAQLMALEDFYNDHKYPTEEMKLELANELALTEKQISGWFCHRRLKDKR 75 589999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-18	7	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.985	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-16	18	84	IPR009057	Homeodomain-like
SMART	SM00389	7.3E-18	18	80	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-15	21	75	IPR001356	Homeobox domain
CDD	cd00086	3.89E-15	21	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MEEPIELQSE DNKTSIDKNN KRKLKTPAQL MALEDFYNDH KYPTEEMKLE LANELALTEK 60 QISGWFCHRR LKDKRLMKGE ICANGRQDRS SGVVQDRGSG RQDRSSGVVQ DRGSGRQDSC 120 GSTKHDDYRY SEPKEVESHG VYNHELSAAE MNYAHRNHYT ENDSETDNTS SENSSSLQER 180 LFLQGQDPYD TEPSRYITPN GSLPPLNPKG YKPSGYLKMK GEIEHAAITA VKNRLGRNYL 240 EDGPLLNIDF DTIPPGAFVF QTANPVNEPY HVANPSLSSS PEVSPGKRQY SLNSRYDSNL 300 NKLSSEDLQM EGSGFGSLHG SDFHDKKSRQ RIKQRTNIQG RAIRANHLHG KNFSNDLYVD 360 STGEAPAYDS TRNHRIGTKH VVERMSSDSA SSPSDTEENN LAVKQINPLR HDYSNSNVKN 420 VQRSEYVKSK PSHSIRNSQI SEDTGGRGLS ERMVKEQKFN GGRKIKKQYH ESDGVRMPSK 480 ETMVAKRAKV DLLHQYDIKQ AHVAEIEPRK TQRSAVEMPS SFSEDDETSS SLD*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MEEPIELQSE DNKTSIDKNN KRKLKTPAQL MALEDFYNDH KYPTEEMKLE LANELALTEK  60
QISGWFCHRR LKDKRLMKGE ICANGRQDRS SGVVQDRGSG RQDRSSGVVQ DRGSGRQDSC  120
GSTKHDDYRY SEPKEVESHG VYNHELSAAE MNYAHRNHYT ENDSETDNTS SENSSSLQER  180
LFLQGQDPYD TEPSRYITPN GSLPPLNPKG YKPSGYLKMK GEIEHAAITA VKNRLGRNYL  240
EDGPLLNIDF DTIPPGAFVF QTANPVNEPY HVANPSLSSS PEVSPGKRQY SLNSRYDSNL  300
NKLSSEDLQM EGSGFGSLHG SDFHDKKSRQ RIKQRTNIQG RAIRANHLHG KNFSNDLYVD  360
STGEAPAYDS TRNHRIGTKH VVERMSSDSA SSPSDTEENN LAVKQINPLR HDYSNSNVKN  420
VQRSEYVKSK PSHSIRNSQI SEDTGGRGLS ERMVKEQKFN GGRKIKKQYH ESDGVRMPSK  480
ETMVAKRAKV DLLHQYDIKQ AHVAEIEPRK TQRSAVEMPS SFSEDDETSS SLD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8752

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513413.1	0.0	homeobox-DDT domain protein RLT1-like
TrEMBL	A0A2K3PQW2	0.0	A0A2K3PQW2_TRIPR; Uncharacterized protein
STRING	XP_004513413.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-65	HB-other family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8752