PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8745
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 122aa    MW: 14652.4 Da    PI: 10.7869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8745genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.4e-124378540
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                              ++s r +t+ kR++g++KK  E+ +LC ++v+ i++
  Tp57577_TGAC_v2_mRNA8745 43 SDSTRRITYNKRKKGLIKKIDEITTLCRIDVCDILY 78
                              678899**************************7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.629129IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-6130IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-8190IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.4893178IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-1634120IPR002100Transcription factor, MADS-box
PfamPF003191.4E-114378IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MARKKVKLAY ITHDSKRRGT FKKRKNGFIS TVSKKLKLVF MLSDSTRRIT YNKRKKGLIK  60
KIDEITTLCR IDVCDILYLD FHSRPEVWPF PWEVQRIITK YKNYFEFEQG KKKLNHESYL  120
M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITHDSKRRGTFKKRK
22236KRKNGFISTVSKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460430.19e-42agamous-like MADS-box protein AGL80
TrEMBLA0A072UZC22e-40A0A072UZC2_MEDTR; MADS-box transcription factor family protein
STRINGXP_004500453.11e-38(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-24M-type_MADS family protein