PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8720
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 288aa    MW: 32026.3 Da    PI: 4.9309
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8720genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.51.3e-25136222297
                    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 
                                 qrl+se+De+++L+Gl df +kt+k+p +d  af++fvkks+s+++s+ ql  K+r LKkKf++           sf+k+hd+
  Tp57577_TGAC_v2_mRNA8720 136 STQRLFSEQDELTILKGLADFISKTKKDPLKDALAFHSFVKKSLSAEASSAQLKRKVRTLKKKFETS---------DSFTKPHDK 211
                               679*************************************************************864.........368****** PP

                    DUF573  87 kifelskkiWg 97 
                               k+f+l kk+Wg
  Tp57577_TGAC_v2_mRNA8720 212 KAFKLFKKVWG 222
                               **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.6E-22138222IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAPKKRPTSP LEDDQKPSTQ KQPEDKVAHE EEDEDDSSEE EEEEEGSSSE EEEKDQSQTA  60
SKNPPPSTPI SNPKPASESE SESESGSESE TDSQPXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXDVKLTG EDSKKSTQRL FSEQDELTIL KGLADFISKT KKDPLKDALA FHSFVKKSLS  180
AEASSAQLKR KVRTLKKKFE TSDSFTKPHD KKAFKLFKKV WGNTSANEAE ENGKIAKGAK  240
KELVISNKKE AAKVKTVVDN SLIVSELFRF GVVAGSSVLN KDAMERVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593377.12e-56probable transcription factor At4g00390
TrEMBLA0A2K3M7J41e-104A0A2K3M7J4_TRIPR; Mediator-associated protein 1-like (Fragment)
STRINGAES636287e-56(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-20DNA-binding storekeeper protein-related transcriptional regulator