PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8717

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 265aa MW: 30670 Da PI: 9.1247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8717	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.9	1.6e-18	18	125	1	90
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkv 68 +fY +YA+++GFs++ ++k+ k++++i ++vC+keg+++ + + + ++ ++r+e+r+gCka + + Tp57577_TGAC_v2_mRNA8717 18 DFYGQYAYKTGFSIKSMLKSKNnsknKKSDKIHYIRYVCNKEGFKKGSLLNpnnkprsdspvviEFEKVKERPEERVGCKAGIYL 102 6**********986544333334499999***********9988888999**99999999*********** PP FAR1 69 kkek.dgkwevtkleleHnHela 90 k+++ +++++++ e H H+l Tp57577_TGAC_v2_mRNA8717 103 KLDEaLNVYKIYRWEGTHCHSLH 125 99************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-15	18	125	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDFASTTLVF HSIKEVEDFY GQYAYKTGFS IKSMLKSKNN SKNKKSDKIH YIRYVCNKEG 60 FKKGSLLNPN NKPRSDSPVV IEFEKVKERP EERVGCKAGI YLKLDEALNV YKIYRWEGTH 120 CHSLHRKEHH RYLRSFREVN EVQGQLALIN SKAGMSMRTS YEVMGQGVGG TENLPFRFSD 180 LKNYLMTIRS KEMMRGEATV IQEFFRNEAM SKPSFYYDMQ VDAAEDIASI FWADGIMQLD 240 YSLFGDVISF VTMYRTNNQY CPLG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8717

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013441754.1	1e-168	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024632961.1	1e-164	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A072TE13	1e-166	A0A072TE13_MEDTR; FAR1 DNA-binding domain protein
STRING	AES61431	1e-151	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-23	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8717