PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8683
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 359aa    MW: 40563.9 Da    PI: 8.8842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8683genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16200245454
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                hn  Er+RRd+iN+++ +Lrel+P++      K +Ka++L  A+eY+k+L
  Tp57577_TGAC_v2_mRNA8683 200 VHNLSERKRRDKINEKIRTLRELIPNC-----NKTDKASMLDDAIEYLKNL 245
                               5*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.247196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-20200273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-13200245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19200255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.70E-16201250No hitNo description
SMARTSM003534.2E-17202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFDSSSSHID FQSSQSKNST HMFTYLTPLK KPRMEISSQK ETTKLEKQCL VGCEYQKTGK  60
VNFSNFSIPA VFLKSTHQQN SSRNVASTKF QEQTAANKSR MELLPTVDEH SEAASHNSAF  120
DIRQKRKASA IDLCNERESS SVCSLEASND LNYGLGKLHE ETDDSPYFSD NEDEKSENMI  180
KEKVAREGNR IKKSYRNAKV HNLSERKRRD KINEKIRTLR ELIPNCNKTD KASMLDDAIE  240
YLKNLKLQLQ IMSMSRGLCM PFNHLMMLPT HHMNLNAQHL MGLRQPQVQF PIPQLSNGGV  300
TENNSRVQMF GFSNQFQVAP PMSIPNAPFM PHIIGNSSTT PSPTCYGDMQ NQPGRTCG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRD
2205210RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8683
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626080.11e-162transcription factor PIF3
TrEMBLA0A2K3PPP30.0A0A2K3PPP3_TRIPR; Transcription factor PIF3-like protein
STRINGAES822981e-161(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-34phytochrome interacting factor 3