PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8682

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 378aa MW: 41483 Da PI: 4.9029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8682	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	124	145	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C++ F ++ H+r+H Tp57577_TGAC_v2_mRNA8682 124 TCPECKREFASWRAAFGHMRKH 145 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MDKNVSNNSA TTNNNPSPPN TPPHTPNETN PNIEGLETIA KTSEEVLAEL NIVSDEEISN 60 ENGDGGANED GGAEGVVPRV MVCALTANVS NTSVVEQVGG DGHVQPFKKR KYNSIRDPPA 120 GKPTCPECKR EFASWRAAFG HMRKHPERPH RGFFPPPTFT PTAPVAGIRV AEDDGRPKKV 180 DDRMLTRVRE LVIDLNRSIG VSAESSGAGG SGGRGRDEEA PVPTHENEEG SRKNVFDLNE 240 LPPILVIVER DSQEPLGDDV SIQQADNIIF LDVVGGVDKK ERIYGLDPEA ERYKRSRSST 300 YDGISSSEYQ HMRTIISDLS TENMTLKEKL KTHEELIHQS QEDSRLLREQ LFQFMEKFSL 360 SHLPPRSDPP PSPPPTA*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MDKNVSNNSA TTNNNPSPPN TPPHTPNETN PNIEGLETIA KTSEEVLAEL NIVSDEEISN  60
ENGDGGANED GGAEGVVPRV MVCALTANVS NTSVVEQVGG DGHVQPFKKR KYNSIRDPPA  120
GKPTCPECKR EFASWRAAFG HMRKHPERPH RGFFPPPTFT PTAPVAGIRV AEDDGRPKKV  180
DDRMLTRVRE LVIDLNRSIG VSAESSGAGG SGGRGRDEEA PVPTHENEEG SRKNVFDLNE  240
LPPILVIVER DSQEPLGDDV SIQQADNIIF LDVVGGVDKK ERIYGLDPEA ERYKRSRSST  300
YDGISSSEYQ HMRTIISDLS TENMTLKEKL KTHEELIHQS QEDSRLLREQ LFQFMEKFSL  360
SHLPPRSDPP PSPPPTA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8682

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3N851	1e-125	A0A2K3N851_TRIPR; Zinc finger (C2H2 type)-like protein
STRING	AES95291	2e-55	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	1e-08	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8682