PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8651

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Nin-like

Protein Properties

Length: 346aa MW: 39671.4 Da PI: 6.3324

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8651	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.9	3.1e-26	218	267	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l dl kyF++pi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl Tp57577_TGAC_v2_mRNA8651 218 AKITLPDLVKYFDMPIVEASKSLNVGLTVLKKKCREFGIPRWPHRKIKSL 267 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.531	202	287	IPR003035	RWP-RK domain
Pfam	PF02042	7.5E-22	220	267	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDSSLTTLLL FNNTIQPELM RSVHVYRGEC DGEEREVERE VEREFVFSKN GSYVEMQATP 60 ILSLLKSFVS KEIFEGYTNG VWLCIFAFHA YNTPPFSHIP TLLLVTRNPK LQAIPNLLND 120 LHMIYKLVPK EEPKDTPESS TAEESKGNNN NFQPPKKLFP VLNQDLNCLP YEDDESELLD 180 DKSGLLDNKS ELLGDETDFE SSSGSVGKKK RAASDIVAKI TLPDLVKYFD MPIVEASKSL 240 NVGLTVLKKK CREFGIPRWP HRKIKSLDSL IHDLQEEAKH QDMEDKAAAM AVLRRQKMLE 300 CEKENIEKMP FMDIRSETKR FRQEVFKRRH RSRVMEKQNS TVASN*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDSSLTTLLL FNNTIQPELM RSVHVYRGEC DGEEREVERE VEREFVFSKN GSYVEMQATP  60
ILSLLKSFVS KEIFEGYTNG VWLCIFAFHA YNTPPFSHIP TLLLVTRNPK LQAIPNLLND  120
LHMIYKLVPK EEPKDTPESS TAEESKGNNN NFQPPKKLFP VLNQDLNCLP YEDDESELLD  180
DKSGLLDNKS ELLGDETDFE SSSGSVGKKK RAASDIVAKI TLPDLVKYFD MPIVEASKSL  240
NVGLTVLKKK CREFGIPRWP HRKIKSLDSL IHDLQEEAKH QDMEDKAAAM AVLRRQKMLE  300
CEKENIEKMP FMDIRSETKR FRQEVFKRRH RSRVMEKQNS TVASN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8651

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU475568	4e-70	CU475568.2 Medicago truncatula chromosome 5 clone mth2-61f16, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003612350.1	0.0	protein RKD5
TrEMBL	G7K041	0.0	G7K041_MEDTR; Plant regulator RWP-RK family protein
STRING	AES95308	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-83	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8651