PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA8649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Nin-like | ||||||||
Protein Properties | Length: 272aa MW: 30809.9 Da PI: 10.2026 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.9 | 1.3e-25 | 149 | 198 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+++dl kyF++p+ +A+k+L+v++TvLKr+CR++G++RWPhRkiksl Tp57577_TGAC_v2_mRNA8649 149 AKITVSDLVKYFDMPLLEASKKLNVGTTVLKRRCRELGLPRWPHRKIKSL 198 78**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.44 | 133 | 219 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.7E-22 | 150 | 198 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEEDSLKIAL EVLEELKMGK NEIGRGDSKV VVANSSMVEV MGGVLNDGQS IKKKKNNIEV 60 KDIYPLKYPI CPKCKGEFFT FSAVIEHLLK NPNCASCGTS NPHQLVDLNK GADEVQQMEI 120 EGSSNAAAAP KPAECFVGKK KRATRDHVAK ITVSDLVKYF DMPLLEASKK LNVGTTVLKR 180 RCRELGLPRW PHRKIKSLDT LIHDLHQEEA AHKEMKNKAA AMAVRRKQKM VESEKERIEK 240 KPFIAIKSET RRLRQYVFKR RYHARVMEKQ N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8649 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027193148.1 | 2e-65 | protein RKD5 isoform X1 | ||||
TrEMBL | A0A2K3MTI3 | 0.0 | A0A2K3MTI3_TRIPR; Protein RKD5-like | ||||
STRING | AES95308 | 6e-64 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9646 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 5e-43 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA8649 |