PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA8428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 1020aa MW: 115720 Da PI: 5.3039 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.5 | 2.7e-28 | 753 | 803 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek isl++l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Tp57577_TGAC_v2_mRNA8428 753 EKLISLDVLQNYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 803 6889*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.063 | 740 | 823 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.8E-25 | 756 | 803 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.68E-23 | 925 | 1010 | No hit | No description |
PROSITE profile | PS51745 | 23.6 | 925 | 1007 | IPR000270 | PB1 domain |
SMART | SM00666 | 5.7E-25 | 925 | 1007 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 3.3E-25 | 926 | 1006 | No hit | No description |
CDD | cd06407 | 8.19E-36 | 926 | 1006 | No hit | No description |
Pfam | PF00564 | 5.1E-19 | 926 | 1006 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1020 aa Download sequence Send to blast |
MQESEEENHD LPQKSKPLDE TGFSMNFDID FENSWPLDHI SNTMYPFLLS TTSQQQHFSP 60 IWTFSDVEDD SIEASGFLSF ILLFLCFWFI SLLLSGNNTK IVTENRVEND DKKKHVTAQH 120 VDALPPLQNP HGYCLIKERM TQALRQFKEW TEQNVLAQVW APVRNGNRYK LTTSGQPFVL 180 DPHSNGLHQY RTVSLMYMFS VDGENDEILG LPGRVFQQKL PEWTPNVQYY SSKEYSRLNH 240 ALHYNVRGTL ALPVFEPPGQ SCVAVLELIM TSQKINYAPE VDKVCKALEV RFLFNYVILL 300 MFVSLQAVNL RSSEILEYPY SQICNEDRQN ALSEILEILT VVCETHNLPL AQTWVPCRHR 360 SVLAHGGGLK KSCSSFDGYC MGQVCMSITE VAFYVIDSHT WGFHDACVEH HLQQGQGVAG 420 RAFLSQNMCF CENISQFCKT DYPLVHYALM FDLTSCFSIC LQSFHTGNDE YVLEXXXXXX 480 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 540 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXKT DYPLVHYALM FDLTSCFSIC 600 LQSFHTGNDE YVLEFFLPPS ISEFSEHKAL LGSILATMKQ NFQSLKVASG FELGEDGSIE 660 IVEILNGRVH SRLESVPIIQ SEKLSTRHDD ASPNMDEGVL PLDPLQQKII TSFDDINDRG 720 ILDDNSGGSI ARISSLETKT KKKTSQRKRG KTEKLISLDV LQNYFSGSLK DAAKSLGVCP 780 TTMKRICRQH GISRWPSRKI KKVNRSLSKL KCVIESVHGV EGAFGLNSPT TSPLHIASNK 840 LEHQTSLSIM PSEPKMKEND FDASKSQPQE PFIGMLVEGA DSCSKDLKNM CPLADAVLED 900 HILEASRTNP PCFDYAPLAQ KEIKIVTIKA TYRDDIIRFR VSLNCGIVEL REEISKRLKL 960 EVGTFDIKYL DDDQEWILVA CDADLQECID ILTSSDSNTI RLVVHDIVSI LGSSVESSE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8428 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013443315.1 | 0.0 | protein NLP7 isoform X1 | ||||
Swissprot | Q8RWY4 | 0.0 | NLP6_ARATH; Protein NLP6 | ||||
TrEMBL | A0A2K3NML0 | 0.0 | A0A2K3NML0_TRIPR; Protein NLP6-like | ||||
STRING | GLYMA09G25230.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA8428 |
Publications ? help Back to Top | |||
---|---|---|---|
|