PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA8333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 117aa MW: 13168.3 Da PI: 9.3393 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 26.6 | 1.6e-08 | 8 | 92 | 2 | 96 |
DUF260 2 CaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 C aCkvl +kC+ C + +hk F + ++k +++ ++++ r+d++++l++eA r P++G++g ++ + q Tp57577_TGAC_v2_mRNA8333 8 CPACKVLHKKCKGAdCL------------MLLIHKTFTGNYLTKWMAERNTDQeRRDLITTLAWEASQRKLHPISGSHGAYMVVAGQ 82 99999999988743154............4568***********9998865555*************************98887777 PP DUF260 87 leqlkaelal 96 e l ++ + Tp57577_TGAC_v2_mRNA8333 83 KEALVNHNNI 92 7666655555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 6.3E-7 | 7 | 87 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MAVRVEKCPA CKVLHKKCKG ADCLMLLIHK TFTGNYLTKW MAERNTDQER RDLITTLAWE 60 ASQRKLHPIS GSHGAYMVVA GQKEALVNHN NILKNEKAVL QLITQQLEAQ VNEQNN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8333 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3M6B3 | 4e-81 | A0A2K3M6B3_TRIPR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 2e-06 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA8333 |