PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8292

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

MYB_related

Protein Properties

Length: 388aa MW: 43594 Da PI: 6.9246

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8292	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.6e-10	66	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++W++eE+ l+ +v ++G g W+tI + R+ ++k++w+++ Tp57577_TGAC_v2_mRNA8292 66 KQKWSAEEEAALKAGVVKHGVGKWRTILKDPEfncvlYIRSNVDLKDKWRNL 117 79********************************999*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.062	61	119	IPR017930	Myb domain
SuperFamily	SSF46689	1.29E-15	63	130	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-5	65	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-6	66	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-12	66	117	IPR009057	Homeodomain-like
CDD	cd11660	1.01E-18	67	117	No hit	No description
SMART	SM00526	5.4E-9	205	270	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	21.82	207	275	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.14E-13	212	284	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.9E-12	212	276	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	7.2E-7	213	268	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
LETGVLGRYD FIFLNQFDCV SPETDWSNIY EQADQTKMDE TSSSHTDLNA AGVCSSSSEV 60 RMGAPKQKWS AEEEAALKAG VVKHGVGKWR TILKDPEFNC VLYIRSNVDL KDKWRNLSVM 120 ANGWTSREKA KVSIRRXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXMTTLWLSL 180 LLLQVMMKLL MLSLFKFQEI CKFLVQEGLL LDNLIMDAIS CLNEHGGSNK TTIAAFIEDQ 240 YYAPEDFKKM LSAKLKYLTS RGKLIKVKRR YRIAPTPAYS DRGRRSPMSL LEGRQRGSFR 300 FDMSRINMPT QSEIDIELEK IRSMSAEEAA AVAARAVAAA EAALAEAEEA VLEAEAAEAE 360 ADAAEAFAEA ARKTEKETKS LKMVHPA*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

LETGVLGRYD FIFLNQFDCV SPETDWSNIY EQADQTKMDE TSSSHTDLNA AGVCSSSSEV  60
RMGAPKQKWS AEEEAALKAG VVKHGVGKWR TILKDPEFNC VLYIRSNVDL KDKWRNLSVM  120
ANGWTSREKA KVSIRRXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXMTTLWLSL  180
LLLQVMMKLL MLSLFKFQEI CKFLVQEGLL LDNLIMDAIS CLNEHGGSNK TTIAAFIEDQ  240
YYAPEDFKKM LSAKLKYLTS RGKLIKVKRR YRIAPTPAYS DRGRRSPMSL LEGRQRGSFR  300
FDMSRINMPT QSEIDIELEK IRSMSAEEAA AVAARAVAAA EAALAEAEEA VLEAEAAEAE  360
ADAAEAFAEA ARKTEKETKS LKMVHPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8292

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013463066.1	1e-100	telomere repeat-binding factor 1
Refseq	XP_024633091.1	1e-100	telomere repeat-binding factor 1
Swissprot	Q8VWK4	9e-37	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A072VG04	1e-98	A0A072VG04_MEDTR; Myb transcription factor
STRING	XP_007147427.1	4e-90	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1453	33	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-38	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8292

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]