PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA8211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | SBP | ||||||||
Protein Properties | Length: 221aa MW: 25623.2 Da PI: 8.9817 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 69.5 | 6.6e-22 | 71 | 118 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq+e+Ce+dl+ +k+yhrrhkvCe+hsk p v+++gl+qrfCqqCsr Tp57577_TGAC_v2_mRNA8211 71 ICQAENCETDLTFMKRYHRRHKVCEFHSKVPYVMIAGLRQRFCQQCSR 118 5**********************************************9 PP | |||||||
2 | SBP | 45.3 | 2.4e-14 | 141 | 171 | 47 | 77 |
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 rfhel efDe+krsCr+rLa+hnerrrk++ Tp57577_TGAC_v2_mRNA8211 141 CRFHELIEFDEAKRSCRKRLARHNERRRKSN 171 69***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-28 | 67 | 157 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 25.564 | 69 | 170 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.81E-22 | 70 | 120 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-15 | 72 | 119 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.16E-11 | 141 | 174 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.1E-8 | 142 | 169 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
LLLSFLTTLT YTMEASSNTL GIPKTSVEEI ESEEKEEEDE NVGVEEDEKK KSVCVSRRKG 60 TSRGGRFSTP ICQAENCETD LTFMKRYHRR HKVCEFHSKV PYVMIAGLRQ RFCQQCSRCS 120 FSIPHIILKN LKFHKPMIIV CRFHELIEFD EAKRSCRKRL ARHNERRRKS NTGNFNEGRS 180 TSIKGQEIND GDFRNIHMNM KSSSSGHENI HKFLISNEYP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-26 | 71 | 169 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8211 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464662.1 | 2e-58 | squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A072VA58 | 4e-57 | A0A072VA58_MEDTR; Squamosa promoter-binding-like protein | ||||
STRING | XP_004488736.1 | 4e-56 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 4e-33 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA8211 |