PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8202
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 348aa    MW: 39734.9 Da    PI: 10.0336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8202genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.63.8e-27146237191
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                               +fYneY+k++GF +r+++ +ksk++g  t+r+f+C keg r  +k+++ + +r+raetrt+C+a++++++++  gk++v +++ +
  Tp57577_TGAC_v2_mRNA8202 146 DFYNEYSKKLGFGIRREYVNKSKKDGVLTSRKFTCFKEGIRGVDKRRQPTGKRNRAETRTDCQARMVIRLDRkIGKYKVVDFVAK 230
                               6**********************************************99*********************9989*********** PP

                      FAR1  85 HnHelap 91 
                               HnH+l+p
  Tp57577_TGAC_v2_mRNA8202 231 HNHPLQP 237
                               ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-23146237IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
LQLAAEINSP SVSTPFSAIT SLCHYQHRSL SPSLSVSLSS PSFSQFQFNG KWRLPKNLNS  60
EIVSTSTARC LPLYPFRRCR RHFHSQCYED YTFTDNMNSS SIPVVDCVDK WVNNIHEQNV  120
QLGQDSIVDS EPHLEMKFDS EAAAYDFYNE YSKKLGFGIR REYVNKSKKD GVLTSRKFTC  180
FKEGIRGVDK RRQPTGKRNR AETRTDCQAR MVIRLDRKIG KYKVVDFVAK HNHPLQPQKY  240
VHMIRSHRRI YKHHKLHLHK RGERSQVDTS RLEAMLTPSD QVDTLGLQHQ ATSQFGTLGF  300
QSLLTPSSQV DTLGLQHQAT SQFGTLGFQG MLTQSSPVDI SGLRNFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8202
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15115212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1-related sequence 5