PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8016
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 675aa    MW: 78210.2 Da    PI: 7.4362
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8016genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.5e-2353141290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +Y +YAk+ GFs r+ + +ks++ng i+ ++  Cskeg+r+++  k ++++  ++ etr+gCka+l +kk+ d++w v+++  +H
  Tp57577_TGAC_v2_mRNA8016  53 YYTRYAKNKGFSFRMGRVTKSRTNGMIIGQEILCSKEGFRAKRYMKqDNSSLIKHDETRVGCKARLYLKKN-DDRWIVSRFIGDH 136
                               8*****************************************9988344555699****************.9************ PP

                      FAR1  86 nHela 90 
                               nHel+
  Tp57577_TGAC_v2_mRNA8016 137 NHELF 141
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2153141IPR004330FAR1 DNA binding domain
PfamPF105514.7E-32263356IPR018289MULE transposase domain
PROSITE profilePS5096611.09543579IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-8553578IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-7554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MTNMDGDVTM VDSNGTHDNA LDVEPLSIRI PLEPPLEPVE GMEFASIEEA KSYYTRYAKN  60
KGFSFRMGRV TKSRTNGMII GQEILCSKEG FRAKRYMKQD NSSLIKHDET RVGCKARLYL  120
KKNDDRWIVS RFIGDHNHEL FSPGSSQSLR VHRKKTKVQK KLADVLDESG LGPSKTTSIL  180
CTESIGIDNF GSSQQDVINY LSVKRQTQLE NEDAQLMLSY FKNCQLKNTG FFYAFQMDAE  240
GKLANCFWVD SRSRIAYKYF GDVVTIDPTY LTSKYNVPFV PFTGVNHHQQ SILFGCALLW  300
DETVESFVWL LSTWLEAMNG VCPKTIFTDQ GAAITNAIGT VFPKVNHRYC MWHIEEKVPE  360
YLNHIYHERE FKNHFYKCIH QSNTIEEFDS EWGAMIDKYG LQDNQWLQEI YSIRSKWVPA  420
CVHHIFCAGM STTQRIESMN KFFKDFLNSS TPLSKFVTQY EKALDACYNK EREKNVKTMK  480
LKPLLRTLYP IEEEASKIYT RKLFRIFQDE LVGSQMFTTE KVEFSDEVMT YKVHEIYKEK  540
PNYYVTFHVT SKESTCTCHK FEFLGILCRH ILTVFLKKKV HYLPSQYVLQ RWTLNAKKQK  600
VQGLSIEEFQ EGGNKVSSTL LFNSVMVHSL EFSERASRSE KHHNIAIQCL QNAIEKLDLL  660
ELEESNEDFV DSTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1509800.0AC150980.20 Medicago truncatula clone mth2-165j9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019429336.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A396JW000.0A0A396JW00_MEDTR; Putative transcription factor FAR family
STRINGAES624140.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-163FAR1-related sequence 5