PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7926
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 369aa    MW: 41430.6 Da    PI: 7.8509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7926genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.7e-28135196159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dgy+WrKYGqK+++g++fpr+YYrCt++   gC ++k+v++s+ed  v eitY+g+H+++
  Tp57577_TGAC_v2_mRNA7926 135 VEDGYSWRKYGQKDIHGAKFPRGYYRCTHRnsqGCLATKQVQKSEEDSMVYEITYKGRHTCT 196
                               58***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-27130197IPR003657WRKY domain
PROSITE profilePS5081123.181130193IPR003657WRKY domain
SuperFamilySSF1182901.12E-24133197IPR003657WRKY domain
SMARTSM007747.6E-39135197IPR003657WRKY domain
PfamPF031061.3E-25136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGENNKCEEI GVIGELMQGE ELTKKLYDQI SPSSSPSSSS TSSSSSSSSH VANGVLIDKI  60
ILSIEKAITM VKGNVGKIKT NNVNMMDSHC SNGSPKSEVQ DSGFKHKHVS KKRKTNPKWT  120
EQVKVYLGTA PEGTVEDGYS WRKYGQKDIH GAKFPRGYYR CTHRNSQGCL ATKQVQKSEE  180
DSMVYEITYK GRHTCTQTSN LNKANPSKKL KFGQNKSQPN QKIQPQEEKI QPSQEKTFSF  240
DNKEEIFPSF NFSSPSKGSE NEDNMFLETM IKNNFMENEN NNIFSESNNF CLSLLDLDNI  300
ELSPSESLLD LYSVELSPRA PLLDITNIPN SVKKKEKITI PIRDILLASF VNPHSPSEIL  360
RYREDLMM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-191371931874Disease resistance protein RRS1
5w3x_D7e-191371931874Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444664.11e-160probable WRKY transcription factor 53
TrEMBLA0A072TMF11e-159A0A072TMF1_MEDTR; Putative transcription factor WRKY family
STRINGXP_004516403.11e-134(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.14e-39WRKY DNA-binding protein 30