PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27891.8 Da PI: 4.9393 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.5e-14 | 55 | 98 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++L+ Tp57577_TGAC_v2_mRNA7832 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQHLH 98 67*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.653 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-18 | 50 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.89E-13 | 52 | 102 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-17 | 54 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-15 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 55 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MENIGDEYKH YWETNMFLQT QELDSWGLDE AFSGYYDSSS PDGAASSAAS SKNIVSERNR 60 RKKLNERLFA LRAVVPNISK MDKASIIKDA IEYIQHLHEQ EKIIQAEIME LELGMPNNIN 120 PNYDYDQELP VLLRSKKKRT DQLYDSVNSR NSPIEVLELR VTYMGENTIV VSLTCSKRTD 180 TMVKLCEVFE SLKLKIITAN ITSFSGRLLK TVFIEANEDE KDLLQIKIRT AIATLNDPLS 240 PMSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 53 | 113 | 9 | 67 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7832 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139608 | 0.0 | BT139608.1 Medicago truncatula clone JCVI-FLMt-13I5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595077.1 | 1e-164 | transcription factor bHLH35 isoform X1 | ||||
Swissprot | Q2HIV9 | 4e-93 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A346H786 | 1e-164 | A0A346H786_9FABA; Transcription factor | ||||
STRING | AES65328 | 1e-163 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 6e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7832 |