PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28344.9 Da PI: 9.9822 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.4 | 1.2e-20 | 40 | 87 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +n+ qvtf kRr gi+KKA+EL++LC+a+va+i+fs+ k++ + Tp57577_TGAC_v2_mRNA7829 40 KMSNEKHLQVTFWKRRSGIFKKASELCTLCGADVALILFSPGEKVFSF 87 67899999**********************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-27 | 31 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.6 | 31 | 91 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-22 | 32 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.31E-26 | 32 | 88 | No hit | No description |
PRINTS | PR00404 | 1.0E-16 | 33 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-22 | 41 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-16 | 53 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-16 | 68 | 89 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRRTNISSKK EICRIKEKMR EKRQHEYVKG RGHQKIEIKK MSNEKHLQVT FWKRRSGIFK 60 KASELCTLCG ADVALILFSP GEKVFSFGAK LHYKSFILFF CNTLCFGHPN IHTVIDHYLS 120 LVPPQNNRTM QFIEAQRSAN VNELNAQLIM LNNTLDLKKR HSDELNQMLK MNQAQYWWAC 180 PIDGMNKDEL EIFKKSLEDL KILVAQQAQF FETQFFQNPL FQPHLFGFNN MGGQGGYGPS 240 GFF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7829 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496799.1 | 2e-92 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2Z6NN06 | 1e-107 | A0A2Z6NN06_TRISU; Uncharacterized protein | ||||
STRING | XP_004496799.1 | 7e-92 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-43 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7829 |