PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7826
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-PHD
Protein Properties Length: 994aa    MW: 112657 Da    PI: 8.5307
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7826genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-09502546953
                               HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                  Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                               ++ ++ L ++F++n  p ++ +  L+++lg++ ++V  WF+N R+
  Tp57577_TGAC_v2_mRNA7826 502 HDAVQKLRQVFAENELPPKSVKDALSQELGIDAAKVNKWFKNARY 546
                               577899*************************************97 PP

2PHD40.27.6e-14239294151
                               SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                       PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                               +C+ C+ +++  +++++lCd +C+++fH+ Cl+++l++e++p g   w+C+ C++k
  Tp57577_TGAC_v2_mRNA7826 239 FCANCKMNEAfpDNDIILCDgTCNRAFHQRCLDPPLDTENIPPGdqGWFCKFCECK 294
                               6999*9955556********56********************9999*******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.9E-14231296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.6E-12235295IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.691237294IPR019787Zinc finger, PHD-finger
CDDcd155042.30E-30239291No hitNo description
PfamPF006284.8E-11239294IPR019787Zinc finger, PHD-finger
SMARTSM002492.2E-9239292IPR001965Zinc finger, PHD-type
PROSITE patternPS013590240291IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007110.9491551IPR001356Homeobox domain
SMARTSM003894.1E-8493555IPR001356Homeobox domain
SuperFamilySSF466895.56E-9494558IPR009057Homeodomain-like
CDDcd000862.29E-6494555No hitNo description
Gene3DG3DSA:1.10.10.604.1E-10495560IPR009057Homeodomain-like
PfamPF000469.2E-7502546IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MPDIEKLNNK GSTKSNNSKE HIELKVDSPQ LKKSSTKLQE KKHKLKSKSH KLSGCTNAPE  60
RTATNDSSNK APNKKNDSSN KRLIIRKNLH KTDRNSSPVQ PSTKIQGGQI SLNNPRKREK  120
HVDEEANIQK RKRRRKKKKQ KQNVDLDDTS RLQRRTRNLL IRMKQEQNLI DAYSGEGWKG  180
QSREKIRPEM ELQRAKKQIL KCKLSIRDAI RQLDSLSSVG SIEGSVIAKD GSVSHEHIFC  240
ANCKMNEAFP DNDIILCDGT CNRAFHQRCL DPPLDTENIP PGDQGWFCKF CECKIEILEA  300
TNAHLGTRFS LDSTWQDVFK EEAAIPDGDD ALLNQEEEWP SDDPEDDDYN PEGKEDSHDG  360
INTEGNDENA YDDSSSSGSM WSLNGECSLL DEGINLEYYS VNGHVDSDES GEIACGRRQR  420
RAVDYKQLYD EMFGKDALPY EQVSEDEDWG PGKRRRREKE SDAVNTLMTL HESENKHPNK  480
EKKDRIRGDS SGIKRPCFRL PHDAVQKLRQ VFAENELPPK SVKDALSQEL GIDAAKVNKW  540
FKNARYMALK MRKHREGGEQ PQSITSKTSK DSTSQHVQKD EILKPEVSKV TVVHSQKKIE  600
NVTDKEKTKA SSSPLKKKQK RPEIPPPLSE NGNKESMEVN DDFNEDVSLM KLLKERKKXX  660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGNN TLILSGGTNT LNFNVIKKPS  720
TSLNSSSNSP SSTLTISEPN NNISQSQSAI RTKRPRTTRK RPNQNYNEAA TLLSEAYPNL  780
FRNLKKLPPP CKFTKPLITE CYSNDFLEPL LLPFNGNSFQ LKNISASQTE FFSVRENEIS  840
EERVVNSDEV LERDSGEEFD CKSILEDEIE EGIDSIIGSR VDDGGTSSGG GGLCYDGSGG  900
RVSPWFERFG GKLKALRHVD DDVNLLNFAM VDILEISPGM KKKPLPVATE KKKQRKKVNV  960
EERNLSLALP LRLKLNYADV RNLWSERGLP FRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115136RKREKHVDEEANIQKRKRRRKK
2115137RKREKHVDEEANIQKRKRRRKKK
3115140RKREKHVDEEANIQKRKRRRKKKKQK
4128134QKRKRRR
5129134KRKRRR
6130134RKRRR
7130137RKRRRKKK
8130138RKRRRKKKK
9132138RRRKKKK
10133138RRKKKK
11453458RRRREK
12614620LKKKQKR
13941955KKPLPVATEKKKQRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235471e-130AC123547.15 Medicago truncatula clone mth2-26n6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487993.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2Z6NY530.0A0A2Z6NY53_TRISU; Uncharacterized protein
STRINGXP_004487993.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-156pathogenesis related homeodomain protein A