PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HB-PHD | ||||||||
Protein Properties | Length: 994aa MW: 112657 Da PI: 8.5307 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.2 | 3.2e-09 | 502 | 546 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ ++ L ++F++n p ++ + L+++lg++ ++V WF+N R+ Tp57577_TGAC_v2_mRNA7826 502 HDAVQKLRQVFAENELPPKSVKDALSQELGIDAAKVNKWFKNARY 546 577899*************************************97 PP | |||||||
2 | PHD | 40.2 | 7.6e-14 | 239 | 294 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+++fH+ Cl+++l++e++p g w+C+ C++k Tp57577_TGAC_v2_mRNA7826 239 FCANCKMNEAfpDNDIILCDgTCNRAFHQRCLDPPLDTENIPPGdqGWFCKFCECK 294 6999*9955556********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.9E-14 | 231 | 296 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.6E-12 | 235 | 295 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.691 | 237 | 294 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 2.30E-30 | 239 | 291 | No hit | No description |
Pfam | PF00628 | 4.8E-11 | 239 | 294 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.2E-9 | 239 | 292 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 240 | 291 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 10.9 | 491 | 551 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-8 | 493 | 555 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-9 | 494 | 558 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.29E-6 | 494 | 555 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-10 | 495 | 560 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.2E-7 | 502 | 546 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 994 aa Download sequence Send to blast |
MPDIEKLNNK GSTKSNNSKE HIELKVDSPQ LKKSSTKLQE KKHKLKSKSH KLSGCTNAPE 60 RTATNDSSNK APNKKNDSSN KRLIIRKNLH KTDRNSSPVQ PSTKIQGGQI SLNNPRKREK 120 HVDEEANIQK RKRRRKKKKQ KQNVDLDDTS RLQRRTRNLL IRMKQEQNLI DAYSGEGWKG 180 QSREKIRPEM ELQRAKKQIL KCKLSIRDAI RQLDSLSSVG SIEGSVIAKD GSVSHEHIFC 240 ANCKMNEAFP DNDIILCDGT CNRAFHQRCL DPPLDTENIP PGDQGWFCKF CECKIEILEA 300 TNAHLGTRFS LDSTWQDVFK EEAAIPDGDD ALLNQEEEWP SDDPEDDDYN PEGKEDSHDG 360 INTEGNDENA YDDSSSSGSM WSLNGECSLL DEGINLEYYS VNGHVDSDES GEIACGRRQR 420 RAVDYKQLYD EMFGKDALPY EQVSEDEDWG PGKRRRREKE SDAVNTLMTL HESENKHPNK 480 EKKDRIRGDS SGIKRPCFRL PHDAVQKLRQ VFAENELPPK SVKDALSQEL GIDAAKVNKW 540 FKNARYMALK MRKHREGGEQ PQSITSKTSK DSTSQHVQKD EILKPEVSKV TVVHSQKKIE 600 NVTDKEKTKA SSSPLKKKQK RPEIPPPLSE NGNKESMEVN DDFNEDVSLM KLLKERKKXX 660 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGNN TLILSGGTNT LNFNVIKKPS 720 TSLNSSSNSP SSTLTISEPN NNISQSQSAI RTKRPRTTRK RPNQNYNEAA TLLSEAYPNL 780 FRNLKKLPPP CKFTKPLITE CYSNDFLEPL LLPFNGNSFQ LKNISASQTE FFSVRENEIS 840 EERVVNSDEV LERDSGEEFD CKSILEDEIE EGIDSIIGSR VDDGGTSSGG GGLCYDGSGG 900 RVSPWFERFG GKLKALRHVD DDVNLLNFAM VDILEISPGM KKKPLPVATE KKKQRKKVNV 960 EERNLSLALP LRLKLNYADV RNLWSERGLP FRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 136 | RKREKHVDEEANIQKRKRRRKK |
2 | 115 | 137 | RKREKHVDEEANIQKRKRRRKKK |
3 | 115 | 140 | RKREKHVDEEANIQKRKRRRKKKKQK |
4 | 128 | 134 | QKRKRRR |
5 | 129 | 134 | KRKRRR |
6 | 130 | 134 | RKRRR |
7 | 130 | 137 | RKRRRKKK |
8 | 130 | 138 | RKRRRKKKK |
9 | 132 | 138 | RRRKKKK |
10 | 133 | 138 | RRKKKK |
11 | 453 | 458 | RRRREK |
12 | 614 | 620 | LKKKQKR |
13 | 941 | 955 | KKPLPVATEKKKQRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7826 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123547 | 1e-130 | AC123547.15 Medicago truncatula clone mth2-26n6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487993.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2Z6NY53 | 0.0 | A0A2Z6NY53_TRISU; Uncharacterized protein | ||||
STRING | XP_004487993.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-156 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7826 |