PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 475aa MW: 52974.4 Da PI: 6.2792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.6e-16 | 261 | 307 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Tp57577_TGAC_v2_mRNA7822 261 VHNLSERRRRDRINEKMKALQELIPRS-----NKSDKASMLDEAIEYLKSLQ 307 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-19 | 254 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-19 | 255 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.841 | 257 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.18E-17 | 260 | 311 | No hit | No description |
Pfam | PF00010 | 2.2E-13 | 261 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-17 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MLFCGMNHCV PDFNSQMDQQ LLPRPKKPFI ADDEIMELLW QNGQVVTQSQ NNRHVNKQPP 60 GRNSDGGTSS EVENNNQFLF MQEGEMASWL HYPINNDHDD DHDSPFSADF LNNNNSSMQT 120 PHRTSQLTEL RRNPMSVAPS RPPNPLQRRS EQVQPNFAYF ARHGVRAEPG SSSILRNSAR 180 ESTVVDSCDT PATMLAAGSE TVRSLADHTE GETGVSAPST TMKGRETEEW EYQSEDVDFE 240 SAEAKKNVSG SSTKRSRAAE VHNLSERRRR DRINEKMKAL QELIPRSNKS DKASMLDEAI 300 EYLKSLQLQV QRVQLMQMMS MGCGMVPMMF PGIQQYMPTI GMGMGMGMGM EMGINRPIMP 360 FPNMLSGSAL PAAANLGPRF AAMPPFHVPH VPTPDSSRMQ ATNQAVSNIL TSVGTYDSNQ 420 SHIPNFTDPY QQYLGPHQMQ FQSMQSRAMN QPNVGKPSIT RPLENPEIHQ SGDK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 270 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7822 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC161749 | 1e-131 | AC161749.3 Medicago truncatula chromosome 7 clone mth2-182g1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493863.1 | 0.0 | transcription factor PIF1-like isoform X3 | ||||
Refseq | XP_004493864.1 | 0.0 | transcription factor PIF1-like isoform X3 | ||||
TrEMBL | A0A2K3PS00 | 0.0 | A0A2K3PS00_TRIPR; Transcription factor PIF1-like protein (Fragment) | ||||
STRING | AES81693 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 2e-52 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7822 |