PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7789
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARR-B
Protein Properties Length: 376aa    MW: 43312 Da    PI: 5.0745
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7789genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.84.2e-22164218255
                   G2-like   2 prlrW..tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                r+ W  +peL e+F++av+qL G+ekAtPk+i elm+v gL  +hv+SHLQk+R+
  Tp57577_TGAC_v2_mRNA7789 164 YRVSWvsSPELQENFLRAVNQL-GIEKATPKQITELMDVRGLETSHVASHLQKFRI 218
                               688896679*************.********************************7 PP
2Response_reg41.28.7e-15211251108
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                               v+++d + ++++++++++ + +y +v + + ++ al+ll++ +   +Dlil+D +mp+md +++l++ ++e  k+p+i+++  ++
  Tp57577_TGAC_v2_mRNA7789  21 VFVIDHDTTQLHAIANMCIECNY-QVITSTLASFALNLLRQTKgpfFDLILIDDQMPDMDSYDFLQHVTQEI-KIPVIMMGVDDT 103
                               799********************.6666667777888888887888**********************9988.9*******7776 PP

                               HHHHHHHHHTTESEEEESS--HHHHH CS
              Response_reg  83 eedalealkaGakdflsKpfdpeelv 108
                                + +      Ga d+  Kp +p+ + 
  Tp57577_TGAC_v2_mRNA7789 104 TSER----MNGACDYWLKPLNPNYIK 125
                               5555....458888888888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-1917136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.3E-2118152No hitNo description
SMARTSM004486.4E-719128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.53520132IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.8E-1021126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.29E-1522122No hitNo description
Gene3DG3DSA:1.10.10.603.7E-21161219IPR009057Homeodomain-like
SuperFamilySSF466891.77E-11162219IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-19163219IPR006447Myb domain, plants
PfamPF047881.4E-11317353IPR006873Protein of unknown function DUF620
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDLSTEFDDL IPYHLLESLR VFVIDHDTTQ LHAIANMCIE CNYQVITSTL ASFALNLLRQ  60
TKGPFFDLIL IDDQMPDMDS YDFLQHVTQE IKIPVIMMGV DDTTSERMNG ACDYWLKPLN  120
PNYIKNMSQH VATIQHDQIE RVSEVVKTGQ KRKKRDEESE TKKYRVSWVS SPELQENFLR  180
AVNQLGIEKA TPKQITELMD VRGLETSHVA SHLQKFRIRH FNCSSKKTKP KSGRANSNVP  240
HESIQVVESM PEQDKKFDSN FLHAQQQHPI PMVFDDFEVS NILTNKTNMM LDDSSSLYEQ  300
AWYPFKELGT PFEEFGFWET AMSHTKTRME ETWTIEELSF NVPGLSIDCF IPPSELWFAS  360
SSEASELPAF HKVRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LYW70.0A0A2K3LYW7_TRIPR; Response regulator receiver domain protein (Fragment)
STRINGXP_004515485.11e-48(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-39response regulator 1