PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 272aa MW: 31286.1 Da PI: 8.8485 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.1 | 1.2e-07 | 28 | 76 | 5 | 54 |
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrt 54 Y + +GFsvrks+ ++ g ++++ f C++eg+re+ + ek++r+ Tp57577_TGAC_v2_mRNA7779 28 YYTRATGFSVRKSHLVRN-AAGVVVQQSFLCYREGYRENICLTPEKRQRE 76 699************999.8888**************9977763333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-5 | 27 | 78 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-25 | 183 | 270 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEYERQLENI VGVEDRASNK LFLFALKYYT RATGFSVRKS HLVRNAAGVV VQQSFLCYRE 60 GYRENICLTP EKRQREQKTI LGVDVEPHSE CTKILLQMYG AMANSAGSFH KVGFVKKDLY 120 NQVRKQRKEI ASDASAAVKY LHDFEKIDQL MFVAHSVDKD NRLERLFWCD GESRKNFEVF 180 GDVLAFDATY RKNKYNCPFV VFSGVNRHNQ TIVFATGLVT MVTEETYVWL LEQFVCAMQD 240 KTPLSVITYC DLAMKNAIIK VFPKAHHRLC A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7779 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634529.1 | 2e-80 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6NML7 | 1e-120 | A0A2Z6NML7_TRISU; Uncharacterized protein | ||||
STRING | GLYMA11G29330.2 | 6e-73 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3265 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-32 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7779 |