PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7779
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 272aa    MW: 31286.1 Da    PI: 8.8485
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7779genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.11.2e-072876554
                      FAR1  5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrt 54
                               Y + +GFsvrks+  ++   g ++++ f C++eg+re+   + ek++r+
  Tp57577_TGAC_v2_mRNA7779 28 YYTRATGFSVRKSHLVRN-AAGVVVQQSFLCYREGYRENICLTPEKRQRE 76
                              699************999.8888**************9977763333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-52778IPR004330FAR1 DNA binding domain
PfamPF105511.7E-25183270IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEYERQLENI VGVEDRASNK LFLFALKYYT RATGFSVRKS HLVRNAAGVV VQQSFLCYRE  60
GYRENICLTP EKRQREQKTI LGVDVEPHSE CTKILLQMYG AMANSAGSFH KVGFVKKDLY  120
NQVRKQRKEI ASDASAAVKY LHDFEKIDQL MFVAHSVDKD NRLERLFWCD GESRKNFEVF  180
GDVLAFDATY RKNKYNCPFV VFSGVNRHNQ TIVFATGLVT MVTEETYVWL LEQFVCAMQD  240
KTPLSVITYC DLAMKNAIIK VFPKAHHRLC A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7779
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634529.12e-80protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6NML71e-120A0A2Z6NML7_TRISU; Uncharacterized protein
STRINGGLYMA11G29330.26e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-32FAR1-related sequence 5