PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7749

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 784aa MW: 90505.6 Da PI: 7.1352

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7749	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.5	5.1e-24	105	192	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 k+Yn+YA + GFs+rk+ +ks+ +g++++r+f+C ++g+r++++ k + ++ ++etrtgC a+++++++ ++k++vt++e+eH Tp57577_TGAC_v2_mRNA7749 105 KCYNNYAVMKGFSIRKDFINKSRVDGSVVSRRFTCHRQGFRSNKDYK--NLKNIQQETRTGCLAHMTISRQPNSKFRVTSFETEH 187 58***************************************9988..8899999************************* PP FAR1 86 nHela 90 nHe++ Tp57577_TGAC_v2_mRNA7749 188 NHEFV 192 *97 PP
2	FAR1	89.7	4e-28	239	327	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn+YA +vGFsvrk++ ++sk +g + +r+++C +eg+r++ek++ ++ +r+r+ tr+gC a+l ++++ dg+++vt++e++H Tp57577_TGAC_v2_mRNA7749 239 EFYNTYAAQVGFSVRKDYVNRSKVDGAVASRRYTCFREGFRQKEKRD-KNVKRPRKDTRIGCLAQLIISRQPDGRYHVTHFEEKH 322 6******************************************99.999****************************** PP FAR1 86 nHela 90 nHel+ Tp57577_TGAC_v2_mRNA7749 323 NHELV 327 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	106	192	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.7E-25	239	327	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-23	448	541	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.336	728	764	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-4	739	766	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MGKESQNLKD SAVADSNMVV GKETDCTSAN ACPVGPSPME INDECQTSNI TNEDKLHIDV 60 ERAQLCQNPD ATSMSVTDTD VTNEEEIYVA PNFGMEFKSE EHAYKCYNNY AVMKGFSIRK 120 DFINKSRVDG SVVSRRFTCH RQGFRSNKDY KNLKNIQQET RTGCLAHMTI SRQPNSKFRV 180 TSFETEHNHE FVTPSDAHML PSQKKLSFAQ AVEVNITGST LDGVPKLGMG FDSEEHAYEF 240 YNTYAAQVGF SVRKDYVNRS KVDGAVASRR YTCFREGFRQ KEKRDKNVKR PRKDTRIGCL 300 AQLIISRQPD GRYHVTHFEE KHNHELVAAC RVHMLRSQKR LAATRVEDNI VAGCSALPKP 360 ASASNCRTVE GFHDLDYDPV DCEYQLPFKC TREIKEDEIE KIRHYFQSKK AKNPSFFYAF 420 QLDATNQITN IFWADEKMIV DYSDFGDVVC FDTSYKFYKD SRPFAPFLGI NNHRQMNIFG 480 AALLYDESVE SFKWLFHVFI EAMSGTKPKT ILRDQDAIIA EAINSILPQT KQRVCVWHVY 540 QDALKQLSHM SVESDSFVND LSCCFFNHEE EVDFIDAWNA LMIIYNLWDN EWLRRIYESR 600 DQWAIAYRRH IFCADIASLL MRENLIGSLK KHLKNDSSVI PFLKHLGKMV TDWHYKELES 660 NYDTSRHMPA LMGDIVTLKH ARDPYTPKIF ELFQKEYEAC LNLVLKPCSE SGSLYNYKVS 720 IYEQVREYMV TFDSSNETVS CSCMKFECVG VLCCHALKVL DYRNIRIVPS KYILKRWTKD 780 ARV*

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MGKESQNLKD SAVADSNMVV GKETDCTSAN ACPVGPSPME INDECQTSNI TNEDKLHIDV  60
ERAQLCQNPD ATSMSVTDTD VTNEEEIYVA PNFGMEFKSE EHAYKCYNNY AVMKGFSIRK  120
DFINKSRVDG SVVSRRFTCH RQGFRSNKDY KNLKNIQQET RTGCLAHMTI SRQPNSKFRV  180
TSFETEHNHE FVTPSDAHML PSQKKLSFAQ AVEVNITGST LDGVPKLGMG FDSEEHAYEF  240
YNTYAAQVGF SVRKDYVNRS KVDGAVASRR YTCFREGFRQ KEKRDKNVKR PRKDTRIGCL  300
AQLIISRQPD GRYHVTHFEE KHNHELVAAC RVHMLRSQKR LAATRVEDNI VAGCSALPKP  360
ASASNCRTVE GFHDLDYDPV DCEYQLPFKC TREIKEDEIE KIRHYFQSKK AKNPSFFYAF  420
QLDATNQITN IFWADEKMIV DYSDFGDVVC FDTSYKFYKD SRPFAPFLGI NNHRQMNIFG  480
AALLYDESVE SFKWLFHVFI EAMSGTKPKT ILRDQDAIIA EAINSILPQT KQRVCVWHVY  540
QDALKQLSHM SVESDSFVND LSCCFFNHEE EVDFIDAWNA LMIIYNLWDN EWLRRIYESR  600
DQWAIAYRRH IFCADIASLL MRENLIGSLK KHLKNDSSVI PFLKHLGKMV TDWHYKELES  660
NYDTSRHMPA LMGDIVTLKH ARDPYTPKIF ELFQKEYEAC LNLVLKPCSE SGSLYNYKVS  720
IYEQVREYMV TFDSSNETVS CSCMKFECVG VLCCHALKVL DYRNIRIVPS KYILKRWTKD  780
ARV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7749

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024641950.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K3P5K9	0.0	A0A2K3P5K9_TRIPR; Protein FAR1-related sequence 5-like
STRING	GLYMA05G06351.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-111	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7749