PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA7370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 152aa MW: 17437.8 Da PI: 9.7488 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.8 | 1.3e-16 | 8 | 77 | 20 | 91 |
FAR1 20 kkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++ ++++++ +++++Csk+g+++++ + + + +r+ +rt+C+a++k + +k+g +++tkl+l+HnHe++p Tp57577_TGAC_v2_mRNA7370 8 YYDNEKKQTRSKEYYCSKQGFKNNKLEG--EVSYERVDSRTNCNAMVKFNVSKEGLYKITKLVLNHNHEFVP 77 5556778899**************9988..8999***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-13 | 8 | 77 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
VRKGRELYYD NEKKQTRSKE YYCSKQGFKN NKLEGEVSYE RVDSRTNCNA MVKFNVSKEG 60 LYKITKLVLN HNHEFVPPEQ RHMLRSMRNL SNAKGDVIKS MVNSGMKVTN VWSYLGEEVG 120 GFNNLGITLK DMHNYVYTEK LKSIEAGDAQ A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA7370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636348.1 | 7e-82 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A072UB45 | 3e-74 | A0A072UB45_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES75586 | 8e-62 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-21 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA7370 |