PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA7275

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 234aa MW: 26215.1 Da PI: 9.4334

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA7275	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.9	5.6e-34	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Tp57577_TGAC_v2_mRNA7275 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.347	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-32	32	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-17	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-24	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-8	37	87	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-21	128	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MERMFPPKKP STMNSHDRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK 60 ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SIKDATALEL QRNTASSSAM 120 IGRNMNEMQI EVQRRLHEQL EVQKHLQLRI EAQGKYMQSI LEKAYQTLAG ENMASAATNL 180 KGVVVGPHGI PEMGLLKEFG SPLSFSSFQD LDLFGGGGGD QLDLQQNIQK QTLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA7275

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051559	0.0	BT051559.1 Medicago truncatula clone MTYF5_F6_F7_F81G-N-14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025669273.1	1e-155	myb family transcription factor APL isoform X4
Swissprot	Q9SAK5	1e-101	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A2K3PDJ0	1e-167	A0A2K3PDJ0_TRIPR; MYB family transcription factor apl-like protein
STRING	GLYMA15G41740.1	1e-148	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-104	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA7275

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]