PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7256
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 560aa    MW: 64219.7 Da    PI: 5.9487
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7256genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.21.2e-09119170256
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 
                               Wt++e laL ++++ +++ + ++      W++vs+k++e g+++s+++Ck+k+e+
  Tp57577_TGAC_v2_mRNA7256 119 WTNHELLALFKITSTIHNFFPDQ---LITWDHVSRKLAEVGINKSAEKCKDKFED 170
                               ******************99987...789************************96 PP
2trihelix93.32.4e-29413508186
                  trihelix   1 rWtkqevlaLiearr.........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                               rW+++evlaLi++++         ++ee+ ++++ k+plWe++s+ m e g++rs+k+Ckekwen+nk++kk+k+  +k+ +s +
  Tp57577_TGAC_v2_mRNA7256 413 RWPRDEVLALINLKSttsvinrsnNVEEKEGNSNIKGPLWERISEGMLEMGYKRSAKRCKEKWENINKYFKKTKDVVNKKkRSLD 497
                               8**************9999988877777777889*****************************************8766648*** PP

                  trihelix  76 sstcpyfdqle 86 
                               s+tcpyf+ql 
  Tp57577_TGAC_v2_mRNA7256 498 SRTCPYFHQLS 508
                               *********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.796111169IPR017877Myb-like domain
PfamPF138372.4E-6118182No hitNo description
PROSITE profilePS500906.876411479IPR017877Myb-like domain
PfamPF138378.9E-19411509No hitNo description
CDDcd122031.09E-23412486No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MLDEGEGGEE QFELEQLRLR RTTTTNTTSS STSLLLHSSS ATNNNTFHYI PLIHPPNYNN  60
NNHPSSSISN SQFQTQTNFF PPSILLPHHS PTQYHNNTTT FNSNFQIQSP SPMFTDSTWT  120
NHELLALFKI TSTIHNFFPD QLITWDHVSR KLAEVGINKS AEKCKDKFED DNISSFFKIH  180
NNHDHNYPPR FISELQDLYQ GGVSADEQQN PHEKENTQQH QEENSRDGDD TDIVVVTKQC  240
DDDDGDDDDK VIEKSKRKKW KRRNRFEMLK SFCETVVNKM MAQQEEIHNK LLEDMLKRDQ  300
EKLAREEEWK NQEIERMNMM AKEQAIASDR QSTIIHFLNK YLSTDGNGKG RSSSQNPNDQ  360
PSNNLEVEST PSSSNVIAQA QQNPSSSETV VESNYTSTLV VPTTMEKLED RRRWPRDEVL  420
ALINLKSTTS VINRSNNVEE KEGNSNIKGP LWERISEGML EMGYKRSAKR CKEKWENINK  480
YFKKTKDVVN KKKRSLDSRT CPYFHQLSSL YNQQQEGKLI DKSQSQSQLV TNPISNSADK  540
VDDQPQAESS DSPVGSSVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626419.10.0trihelix transcription factor GTL2
TrEMBLA0A2K3NHL30.0A0A2K3NHL3_TRIPR; Trihelix transcription factor
STRINGAES826370.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-57Trihelix family protein